X-LDR: an atlas of linkage disequilibrium across species | Genome Biology
Overview of the studyDatasets The study surveyed human and nonhuman samples (Table 1). Human samples included 1KG samples, unrelated…
A unified catalog of 14,062 microbial species reference genomes provides new insight into the gut microbiota in high-altitude mammals | Microbiome
Zhang Z, Xu D, Wang L, Hao J, Wang J, Zhou X, et al. Convergent evolution of rumen…
Unexplored diversity and molecular genetic signatures of chimallin and phuz encoding phages | BMC Genomics
Yuan Y, Gao M. Jumbo bacteriophages: an overview. Front Microbiol. 2017;8:403. PubMed PubMed Central Google Scholar Al-Shayeb B,…
Next-generation sequencing, assembly, annotation, and phylogenomic analysis of the complete mitochondrial genome of the painted lady butterfly Vanessa cardui (Linnaeus, 1758) (Insecta: Lepidoptera: Nymphalidae) | BMC Genomics
Lane N, Power. Sex, Suicide: Mitochondria and the Meaning of Life. 2nd edition. Oxford, UK: Oxford University Press;…
Host species and geographic location shape microbial diversity and functional potential in the conifer needle microbiome | Microbiome
Addison S, Armstrong C, Wigley K, Hartley R, Wakelin S. What matters most? Assessment of within-canopy factors influencing…
High-resolution profiling of bacterial and fungal communities using pangenome-informed taxon-specific long-read amplicons | Microbiome
Song S, Liu Y, Wang NR, Haney CH. Mechanisms in plant-microbiome interactions: lessons from model systems. Curr Opin…
Prophage landscape in Enterococcus faecium: diversity, resistance genes, virulence factors, and endolysin profiling | BMC Genomics
Wei Y, Palacios Araya D, Palmer KL. Enterococcus faecium: evolution, adaptation, pathogenesis and emerging therapeutics. Nat Rev Microbiol.…
Natural sex reversal imparts permanent compositional changes to the swamp eel gonadal microbiome | Microbiome
Fish maintenance and trial design The sourcing of swamp eel and the rearing procedures employed in this study…
Evolutionary diversification and expressional profile of adrenergic receptors in the Pacific oyster Crassostrea gigas | BMC Genomics
Motiejunaite J, Amar L, Vidal-Petiot E. Adrenergic receptors and cardiovascular effects of catecholamines. Ann Endocrinol. 2021;82:193–7. Google Scholar …
Natural selection exerted by historical coronavirus epidemic(s): comparative genetic analysis in China Kadoorie Biobank and UK Biobank | BMC Genomics
AppendixMethodsStatistics and reproducibility The details of each analysis are outlined in the methods section and all of the…
SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology
Model residuals of linear regression and logistic regression Linear regression and logistic regression are regular models to fit…
Genetic variation and genome-enabled selection of white lupin for key seed quality traits | BMC Genomics
Foyer CH, Lam H-M, Nguyen HT, Siddique KHM, Varshney RK, Colmer TD, et al. Neglecting legumes has compromised…