{"id":301072,"date":"2025-11-22T08:31:08","date_gmt":"2025-11-22T08:31:08","guid":{"rendered":"https:\/\/www.newsbeep.com\/au\/301072\/"},"modified":"2025-11-22T08:31:08","modified_gmt":"2025-11-22T08:31:08","slug":"metagenomic-identification-isolation-and-complete-genome-characterization-of-two-novel-picornaviruses-in-wild-duck-from-northeastern-siberia-virology-journal","status":"publish","type":"post","link":"https:\/\/www.newsbeep.com\/au\/301072\/","title":{"rendered":"Metagenomic identification, isolation, and complete genome characterization of two novel picornaviruses in wild duck from Northeastern Siberia | Virology Journal"},"content":{"rendered":"

Djunaidi H, Djunaidi ACM. The Economic Impacts of Avian Influenza on World Poultry Trade and the U.S. Poultry Industry: A Spatial Equilibrium Analysis | Journal of Agricultural and Applied Economics. Cambridge Core. https:\/\/doi.org\/10.1017\/S1074070800023014<\/a><\/p>\n

Zell R. Picornaviridae\u2014the ever-growing virus family. Arch Virol. 2017;163:299\u2013317. https:\/\/doi.org\/10.1007\/s00705-017-3614-8<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Shan T, Yang S, Wang H, Wang H, Zhang J, Gong G, et al. Virome in the cloaca of wild and breeding birds revealed a diversity of significant viruses. Microbiome. 2022;10:60. https:\/\/doi.org\/10.1186\/s40168-022-01246-7<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Yang C, Shah PT, Bahoussi AN, Wu C, Wang L, Xing L. Duck hepatitis a virus: Full-length genome-based phylogenetic and phylogeographic view during 1986\u20132020. Virus Res. 2023;336:199216. https:\/\/doi.org\/10.1016\/j.virusres.2023.199216<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Su X, Shuo D, Luo Y, Pan X, Yan D, Li X, et al. An emerging Duck Egg-Reducing syndrome caused by a novel picornavirus containing seven putative 2A peptides. Viruses. 2022;14:932. https:\/\/doi.org\/10.3390\/v14050932<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Liao Q, Zheng L, Yuan Y, Shi J, Zhang D. Genomic characterization of a novel picornavirus in Pekin ducks. Vet Microbiol. 2014;172:78\u201391. https:\/\/doi.org\/10.1016\/j.vetmic.2014.05.002<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Wang X, Liu N, Wang F, Ning K, Li Y, Zhang D. Genetic characterization of a novel duck-origin picornavirus with six 2A proteins. 2014. https:\/\/doi.org\/10.1099\/vir.0.063313-0<\/a><\/p>\n

Pan M, Yang X, Zhou L, Ge X, Guo X, Liu J, et al. Duck hepatitis A virus possesses a distinct type IV internal ribosome entry site element of picornavirus. J Virol. 2012;86:1129\u201344. https:\/\/doi.org\/10.1128\/jvi.00306-11<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zhao S, Wu B, Wang Q, Wei X, Liu X, Tang Y, et al. Advances in the Duck hepatitis A virus and lessons learned from those in recent years. Microb Pathog. 2024;197:107018. https:\/\/doi.org\/10.1016\/j.micpath.2024.107018<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zhang Y, Wu S, Liu W, Hu Z. Current status and future direction of Duck hepatitis A virus vaccines. Avian Pathol. 2023;52:89\u201399. https:\/\/doi.org\/10.1080\/03079457.2022.2162367<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zhang R, Chen J, Zhang J, Yang Y, Li P, Lan J, et al. Novel Duck hepatitis A virus type 1 isolates from adult Ducks showing egg drop syndrome. Vet Microbiol. 2018;221:33\u20137. https:\/\/doi.org\/10.1016\/j.vetmic.2018.05.023<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zhang R, Yang Y, Lan J, Xie Z, Zhang X, Jiang S. Evidence of possible vertical transmission of Duck hepatitis A virus type 1 in Ducks. Transbounding Emerg Dis. 2021;68:267\u201375. https:\/\/doi.org\/10.1111\/tbed.13708<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Rajendran R, Sundaram RS, Rao PL, Senthil Nathan DJ, Muthukrishnan M, Manoharan S, et al. Molecular and phylogenetic analyses of the first complete genome sequence of Duck hepatitis A virus genotype 2 from India. Gene. 2025;941:149236. https:\/\/doi.org\/10.1016\/j.gene.2025.149236<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Li C, Shan T, Chen Z, Zhou J, Li H, Tong G, et al. Isolation and complete genome analysis of a novel Duck picornavirus in China. Vet Microbiol. 2021;253:108950. https:\/\/doi.org\/10.1016\/j.vetmic.2020.108950<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Li Y, Wang K, Yu K, Hu F, Tian X, Huang B, et al. Identification and genome characterization of a novel picornavirus from ducks in China. Arch Virol. 2020;165:2087\u20139. https:\/\/doi.org\/10.1007\/s00705-020-04691-7<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Wille M, Eden J-S, Shi M, Klaassen M, Hurt AC, Holmes EC. Virus-virus interactions and host ecology are associated with RNA Virome structure in wild birds. Mol Ecol. 2018;27:5263\u201378. https:\/\/doi.org\/10.1111\/mec.14918<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Sharshov K, Dubovitskiy N, Derko A, Loginova A, Kolotygin I, Zhirov D, et al. Does avian coronavirus Co-Circulate with avian paramyxovirus and avian influenza virus in wild ducks in siberia? Viruses. 2023;15:1121. https:\/\/doi.org\/10.3390\/v15051121<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Marchenko V, Danilenko A, Kolosova N, Bragina M, Molchanova M, Bulanovich Y, et al. Diversity of gammacoronaviruses and deltacoronaviruses in wild birds and poultry in Russia. Sci Rep. 2022;12:19412. https:\/\/doi.org\/10.1038\/s41598-022-23925-z<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zhirov D, Dubovitskiy N, Derko A, Loginova A, Sobolev I, Ktitorov P, et al. First detection and diversity of astroviruses in wild migratory birds of Sakhalin Island, North Pacific. Virus Genes. 2024;61:244\u20138. https:\/\/doi.org\/10.1007\/s11262-024-02130-2<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Nikitina NV, Yavdoshak LI, Leonov IK, Trubitsyn MM. Serological monitoring of Duck viral hepatitis type I in Russian federation. Ptitsevodstvo. 2022;68\u201371. https:\/\/doi.org\/10.33845\/0033-3239-2022-71-7-8-68-71<\/a>.<\/p>\n

Concei\u00e7\u00e3o-Neto N, Yinda KC, Van Ranst M, Matthijnssens J, NetoVIR. Modular approach to customize sample Preparation procedures for viral metagenomics. In: Moya A, P\u00e9rez Brocal V, editors. The human virome: methods and protocols. New York, NY: Springer; 2018. pp. 85\u201395. https:\/\/doi.org\/10.1007\/978-1-4939-8682-8_7<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

De Coninck L, Faye L, Basler N, Jansen D, Van Espen L. ViPER. 2023. https:\/\/doi.org\/10.5281\/zenodo.5502203<\/a><\/p>\n

Tian B, Cai D, He T, Deng L, Wu L, Wang M et al. Frontiers | isolation and selection of Duck primary cells as pathogenic and innate Immunologic cell models for Duck Plague Virus. https:\/\/doi.org\/10.3389\/fimmu.2019.03131<\/a><\/p>\n

Sch\u00e4ffer AA, Hatcher EL, Yankie L, Shonkwiler L, Brister JR, Karsch-Mizrachi I, et al. VADR: validation and annotation of virus sequence submissions to GenBank. BMC Bioinformatics. 2020;21:211. https:\/\/doi.org\/10.1186\/s12859-020-3537-3<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zulkower V, Rosser S. DNA features viewer: a sequence annotation formatting and plotting library for python. Bioinformatics. 2020;36:4350\u20132. https:\/\/doi.org\/10.1093\/bioinformatics\/btaa213<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:772\u201380. https:\/\/doi.org\/10.1093\/molbev\/mst010<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, et al. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 2020;37:1530\u20134. https:\/\/doi.org\/10.1093\/molbev\/msaa015<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Yu G, Smith DK, Zhu H, Guan Y, Lam TT-Y. Methods Ecol Evol. 2017;8:28\u201336. https:\/\/doi.org\/10.1111\/2041-210X.12628<\/a>. ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data.<\/p>\n

Lorenz R, Bernhart SH, H\u00f6ner zu Siederdissen C, Tafer H, Flamm C, Stadler PF et al. ViennaRNA Package 2.0. Algorithms for Molecular Biology. 2011;6:26. https:\/\/doi.org\/10.1186\/1748-7188-6-26<\/a><\/p>\n

Lu JS, Bindewald E, Kasprzak WK, Shapiro BA. RiboSketch: versatile visualization of multi-stranded RNA and DNA secondary structure. Bioinformatics. 2018;34:4297\u20139. https:\/\/doi.org\/10.1093\/bioinformatics\/bty468<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Martin DP, Varsani A, Roumagnac P, Botha G, Maslamoney S, Schwab T, et al. RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets. Virus Evol. 2021;7:veaa087. https:\/\/doi.org\/10.1093\/ve\/veaa087<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zhang R, Zhou G, Xin Y, Chen J, Lin S, Tian Y, et al. Identification of a conserved neutralizing linear B-cell epitope in the VP1 proteins of Duck hepatitis A virus type 1 and 3. Vet Microbiol. 2015;180:196\u2013204. https:\/\/doi.org\/10.1016\/j.vetmic.2015.09.008<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Wu X, Zhang T, Meng F, Guo D, Yin X, Wulin S, et al. Mapping a type-specific epitope by monoclonal antibody against VP3 protein of Duck hepatitis A type 1 virus. Sci Rep. 2017;7:10820. https:\/\/doi.org\/10.1038\/s41598-017-10909-7<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Yang X, Zeng Q, Wang M, Cheng A, Pan K, Zhu D et al. Frontiers | DHAV-1 2A1 Peptide \u2013 A newly discovered Co-expression tool that mediates the ribosomal skipping function. https:\/\/doi.org\/10.3389\/fmicb.2018.02727<\/a><\/p>\n

Hellen CUT, de Breyne S. A distinct group of Hepacivirus\/Pestivirus-Like internal ribosomal entry sites in members of diverse picornavirus genera: evidence for modular exchange of functional noncoding RNA elements by recombination. J Virol. 2007;81:5850\u201363. https:\/\/doi.org\/10.1128\/jvi.02403-06<\/a>.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ma X, Sheng Z, Huang B, Qi L, Li Y, Yu K, et al. Molecular evolution and genetic analysis of the major capsid protein VP1 of Duck hepatitis A viruses: implications for antigenic stability. PLoS ONE. 2015;10:e0132982. https:\/\/doi.org\/10.1371\/journal.pone.0132982<\/a>.<\/p>\n


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