{"id":778492,"date":"2026-07-04T12:25:26","date_gmt":"2026-07-04T12:25:26","guid":{"rendered":"https:\/\/www.newsbeep.com\/au\/778492\/"},"modified":"2026-07-04T12:25:26","modified_gmt":"2026-07-04T12:25:26","slug":"ai-designed-protein-sheaths-solve-the-solubility-problem-for-membrane-proteins","status":"publish","type":"post","link":"https:\/\/www.newsbeep.com\/au\/778492\/","title":{"rendered":"AI-designed protein sheaths solve the solubility problem for membrane proteins"},"content":{"rendered":"<p>Protein sheaths designed by a deep learning algorithm can be used to solubilise cell membrane proteins without significantly affecting their structure or function, researchers in the US have shown. The technology should make it much easier to study membrane proteins, and could potentially lead to the development of new drugs or vaccines.<\/p>\n<p>Nearly a third of the human proteome comprises proteins that sit within or span the cell membrane (for example, receptors and ion channels) and they are the target of more than half of clinically approved drugs. Studying them, however, is fraught with difficulty, as they are naturally insoluble in water: \u2018Membrane proteins are embedded in this greasy environment that is the lipid bilayer, so the way to take them out is by using detergent,\u2019 explains computational biologist <a title=\"Baker lab members\" href=\"https:\/\/www.bakerlab.org\/members\/\" rel=\"nofollow noopener\" target=\"_blank\">Ljubica Mihaljevi\u0107<\/a> at the University of Washington\u2019s Institute of Protein Design in Seattle; \u2018It\u2019s like washing dishes that are oily: it breaks up the membrane, and those detergent micelles wrap around the protein, shielding it from the solvent but enabling it to be soluble in solution.\u2019<\/p>\n<p>This process is labour intensive, unreliable, and means further separation steps are needed to isolate the proteins before they can be used. In 2015, a new approach was developed by another US-based research group that involves encircling a membrane protein with a naturally-occurring apolipoprotein AI.1 This protein is amphipathic \u2013 it has a lipophilic interior that interacts with hydrophobic residues on the membrane protein\u2019s surface, and a hydrophilic exterior that makes the whole complex soluble in aqueous solution. However, the interaction between apolipoprotein AI and proteins is non-specific.<\/p>\n<p>Wrappers delight<\/p>\n<p>Mihaljevi\u0107 and colleagues in the group of <a title=\"David Baker | Institute for Protein Design\" href=\"https:\/\/www.ipd.uw.edu\/david-baker\/\" rel=\"nofollow noopener\" target=\"_blank\">David Baker<\/a> \u2013 who shared the <a title=\"How AI protein structure prediction and design won the Nobel prize | Chemistry World\" href=\"https:\/\/www.chemistryworld.com\/features\/how-ai-protein-structure-prediction-and-design-won-the-nobel-prize\/4020354.article\" rel=\"nofollow noopener\" target=\"_blank\">2024 Nobel Prize in chemistry for computational protein design<\/a> \u2013 have now used their deep learning algorithm RF diffusion to custom design protein sheaths called Wraps (water-soluble RF-diffused amphipathic proteins) that are tailored to encapsulate the cell-bound regions of specific target proteins while leaving their functional ends free.2 The amino acid sequence for these Wraps are then genetically encoded and expressed along with the membrane protein in Escherichia coli bacteria. The team has used the approach to capture and analyse a variety of membrane proteins.<\/p>\n<p class=\"picture\"><img fetchpriority=\"high\" decoding=\"async\" alt=\"The structures for six different ring shaped proteins showing the side view and overhead view which includes the hole at the centre of the structures. Each has an outer layer of helices and an inner layer of folded sheets.\" src=\"https:\/\/www.newsbeep.com\/au\/wp-content\/uploads\/2026\/07\/549963_wc29_06_2026_proteinwrapsinarticle_785389.jpg\"   loading=\"eager\" class=\"lazyloaded\" width=\"2226\" height=\"1169\"\/><\/p>\n<p>The researchers looked at a Mycobacterial porin protein whose structure had previously been solved using traditional methods. \u2018What we are able to do right now is confirm a structure that is unchanged based on the previous structure,\u2019 says Mihaljevi\u0107; \u2018Unfortunately other proteins that we were able to wrap were too small to be able to actually solve the structure.\u2019 As methods such as cryo-electron microscopy improve, the researchers hope it will be possible to ascertain structures of smaller wrapped proteins directly.<\/p>\n<p>The researchers then studied other proteins, including outer-membrane proteins of the Treponema pallidum bacterium, which causes syphilis. The researchers used the AlphaFold protein folding algorithm to predict the shapes of the folded proteins and then designed Wrap sheaths to fit those structures. They found that the resulting sheaths could bind the proteins and stabilise them in solution. The bound proteins showed reactivity towards serum extracted from syphilis-infected rabbits. Mihaljevi\u0107 says the current work is \u2018just a proof of concept,\u2019 but reveals that collaborating laboratories are studying the technology\u2019s potential for monoclonal antibodies and vaccines.<\/p>\n<p>Synthetic biologist <a title=\"Chang C Liu | Liu lab\" href=\"https:\/\/liulab.com\/ccl\/%20\" rel=\"nofollow noopener\" target=\"_blank\">Chang Liu<\/a> at University of California, Irvine says that \u2018the challenge of solubilising cell membrane proteins is a big one and this makes a really significant contribution\u2019. He believes one of the first applications could involve biochemical assays of samples isolated from patients: \u2018Even in those more common drug development and biological applications, you always run in to this challenge that you can\u2019t get a reliable source of the membrane protein to work with, and I\u2019m somewhat convinced that this method and others in this realm will make a step change in that direction.\u2019 The technique is promising enough, he says, for researchers to start applying it: \u2018You\u2019ll find out the use cases in which it works really well and the use cases in which other developments are necessary,\u2019 he concludes.<\/p>\n","protected":false},"excerpt":{"rendered":"Protein sheaths designed by a deep learning algorithm can be used to solubilise cell membrane proteins without significantly&hellip;\n","protected":false},"author":2,"featured_media":778493,"comment_status":"","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[7],"tags":[64,63,128],"class_list":["post-778492","post","type-post","status-publish","format-standard","has-post-thumbnail","category-science","tag-au","tag-australia","tag-science"],"_links":{"self":[{"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/posts\/778492","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/comments?post=778492"}],"version-history":[{"count":0,"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/posts\/778492\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/media\/778493"}],"wp:attachment":[{"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/media?parent=778492"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/categories?post=778492"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.newsbeep.com\/au\/wp-json\/wp\/v2\/tags?post=778492"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}