{"id":578467,"date":"2026-04-03T00:38:22","date_gmt":"2026-04-03T00:38:22","guid":{"rendered":"https:\/\/www.newsbeep.com\/ca\/578467\/"},"modified":"2026-04-03T00:38:22","modified_gmt":"2026-04-03T00:38:22","slug":"building-viruses-from-scratch-to-fight-antibiotic-resistant-bacteria","status":"publish","type":"post","link":"https:\/\/www.newsbeep.com\/ca\/578467\/","title":{"rendered":"Building viruses &#8216;from scratch&#8217; to fight antibiotic-resistant bacteria"},"content":{"rendered":"<p>A bacteriophage is a virus that infects and replicates within bacteria. Image by Dr. Victor Padilla-Sanchez, PhD &#8211; Own work (CC BY-SA 4.0)\n<\/p>\n<p>The first fully synthetic bacteriophage engineering system for Pseudomonas aeruginosa, an antibiotic-resistant bacterium of global concern, has been created at Yale University.<\/p>\n<p>The system was enabled by New England Biolabs\u2019 High-Complexity Golden Gate Assembly (HC-GGA) platform. With this method, researchers engineer bacteriophages synthetically using sequence data rather than bacteriophage isolates.<\/p>\n<p>This system divides the 41S1 genome into DNA fragments small enough to be synthesised and to avoid toxicity during DNA propagation, with all but one maintained in\u00a0Escherichia coli. <\/p>\n<p>These fragments are next readily assembled into a one-pot reaction. After this, phages can be rescued by direct transformation into\u00a0P. aeruginosa\u00a0PAO1 or\u00a0E. coli\u00a010-beta cells.<\/p>\n<p>Bacteriophages, <a href=\"https:\/\/www.pharmamicroresources.com\/2023\/01\/the-chase-viruses-vs-bacteria.html\" rel=\"nofollow noopener\" target=\"_blank\">viruses that infect bacteria<\/a>, have been used as medical treatments for bacterial infections for more than 100 years.<\/p>\n<p>Most phage-based research has remained focused on naturally occurring viruses, largely because traditional methods for modifying phages are slow, complex, and difficult to scale.<\/p>\n<p>Using the new system, the team constructed a\u00a0P. aeruginosa\u00a0phage from 28 synthetic DNA fragments. They then programmed the virus with new capabilities by introducing point mutations as well as DNA insertions and deletions. These changes allowed the researchers to swap tail fibre genes to change which bacteria the phage could infect and to add fluorescent markers that made infections visible in real time.<\/p>\n<p>Bio-technological leap<\/p>\n<p>Lead scientist Andy Sikkema, <a href=\"https:\/\/www.pharmamicroresources.com\/2026\/01\/fully-synthetic-bacteriophage.html\" rel=\"nofollow noopener\" target=\"_blank\">as reported by Pharmaceutical Microbiology Resources<\/a>, says: \u201cEven in the best of cases, bacteriophage engineering has been extremely labour-intensive. Researchers spent entire careers developing processes to engineer specific model bacteriophages in host bacteria.\u201d<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" width=\"688\" height=\"507\" src=\"https:\/\/www.newsbeep.com\/ca\/wp-content\/uploads\/2026\/04\/Thiomargarita-bacteria.jpg\" alt=\"\" class=\"wp-image-1976537\"\/>Mycobacterium tuberculosis (Public Health Image Library, NIAID, Image ID: 18139)<\/p>\n<p>Sikkema adds: \u201cThis synthetic method offers technological leaps in simplicity, safety and speed, paving the way for biological discoveries and therapeutic development.\u201d<\/p>\n<p>Digital DNA<\/p>\n<p>The platform enables scientists to assemble an entire phage genome outside the cell using synthetic DNA, incorporating all planned genetic changes during construction. Once assembled, the genome is introduced into a safe laboratory strain where it becomes an active bacteriophage.<\/p>\n<p>This strategy avoids many long-standing obstacles in phage research. Traditional approaches depend on maintaining physical phage samples and using specialized host bacteria, which can be especially challenging when working with viruses that infect dangerous human pathogens. The new method also eliminates the need for repeated rounds of screening or step-by-step genetic edits inside living cells.<\/p>\n<p>In contrast with other DNA assembly techniques that combine fewer but longer fragments, the new platform uses shorter DNA segments. These shorter pieces are easier to produce, less toxic to host cells, and less likely to contain errors. The method also works well with phage genomes that contain repeated sequences or extreme GC content, both of which often complicate DNA assembly.<\/p>\n<p>GC\u00a0content\u00a0<a href=\"https:\/\/www.pharmamicroresources.com\/2025\/02\/new-3d-imaging-approach-reveals.html\" rel=\"nofollow noopener\" target=\"_blank\">refers\u00a0to\u00a0the\u00a0percentage\u00a0of<\/a>\u00a0guanine\u00a0(G)\u00a0and\u00a0cytosine\u00a0(C)\u00a0bases\u00a0in\u00a0a\u00a0DNA\u00a0or\u00a0RNA\u00a0molecule.<\/p>\n<p>By simplifying the process and expanding what is technically possible, this approach significantly broadens the potential for developing bacteriophages as targeted therapies against antibiotic-resistant infections.<\/p>\n<p>Collaboration turns the abstract into therapies<\/p>\n<p>NEB researchers had spent years refining Golden Gate Assembly so it could reliably handle large DNA targets made from many fragments. Yale researchers recognized that these tools could unlock new possibilities in phage biology and reached out to explore more ambitious applications.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" width=\"768\" height=\"552\" src=\"https:\/\/www.newsbeep.com\/ca\/wp-content\/uploads\/2026\/04\/18b80cc1b9ac0077f2acdbbd4c8f69625f5cbd0a.jpg\" alt=\"The vast majority of measles cases tallied by the Centers for Disease Control and Prevention are patients not vaccinated against the disease\" class=\"wp-image-3781644\"\/>Vaccination \u2013 Copyright AFP MANDEL NGAN<\/p>\n<p>The scientists first optimized the method using a well-studied model virus,\u00a0Escherichia coli\u00a0phage T7. From there, collaborative teams expanded the technique to non-model phages that target some of the most antibiotic-resistant bacteria known.<\/p>\n<p>An earlier study using the same Golden Gate approach to build high-GC content\u00a0Mycobacterium\u00a0phages was reported in November 2025 in collaboration with the Hatfull Lab at the University of Pittsburgh and Ansa Biotechnologies. <\/p>\n<p>In another example, researchers from Cornell University partnered with NEB to create synthetically engineered T7 phages that function as biosensors to detect\u00a0E. coli\u00a0in drinking water.<\/p>\n<p>Research paper<\/p>\n<p>The findings <a href=\"https:\/\/www.pnas.org\/doi\/10.1073\/pnas.2525963123\" rel=\"nofollow noopener\" target=\"_blank\">appear in the journal<\/a> Proceedings of the National Academy of Sciences, titled \u201cA fully synthetic Golden Gate assembly system for engineering a Pseudomonas aeruginosa phiKMV-like phage.\u201d<\/p>\n","protected":false},"excerpt":{"rendered":"A bacteriophage is a virus that infects and replicates within bacteria. Image by Dr. Victor Padilla-Sanchez, PhD &#8211;&hellip;\n","protected":false},"author":2,"featured_media":578468,"comment_status":"","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[10],"tags":[4345,221704,49,48,84,392,15020,1058,32674,221705,16038],"class_list":["post-578467","post","type-post","status-publish","format-standard","has-post-thumbnail","category-health","tag-bacteria","tag-bacteriophage","tag-ca","tag-canada","tag-health","tag-healthcare","tag-infection","tag-medicine","tag-microbiology","tag-phages","tag-viruses"],"_links":{"self":[{"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/posts\/578467","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/comments?post=578467"}],"version-history":[{"count":0,"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/posts\/578467\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/media\/578468"}],"wp:attachment":[{"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/media?parent=578467"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/categories?post=578467"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.newsbeep.com\/ca\/wp-json\/wp\/v2\/tags?post=578467"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}