Bioinformatics - Ireland News Beep

ParaRef: a decontaminated reference database for parasite detection in ancient and modern metagenomic datasets | Genome Biology

October 23, 2025

Blake DP, Betson M. One health: parasites and beyond. Parasitology. 2017;144:1–6. PubMed Google Scholar Coulter JBS. Global importance…

SScience

iNOME-seq: in vivo simultaneous genome-wide mapping of chromatin accessibility, nucleosome positioning, DNA-binding protein sites, and DNA methylation in Arabidopsis | Genome Biology

October 22, 2025

Plant lines and growth conditions The plant lines used in this study were derived from A. thaliana wild-type…

SScience

MultiModalGraphics: an R package for graphical integration of multi-omics datasets | BMC Bioinformatics

October 21, 2025

MultiModalGraphics is an R/Bioconductor package that leverages object-oriented S4 classes to visualize multimodal biological data with embedded statistical…

TTechnology

Topology-aware functional similarity: integrating extended neighborhoods via exponential attenuation | BMC Bioinformatics

October 21, 2025

Experiment datasets This study systematically evaluates protein-protein interaction (PPI) networks from four model organisms: Saccharomyces cerevisiae, Arabidopsis thaliana,…

GGenetics

World Record Set For Fastest Genome Sequencing | Health

October 20, 2025

Key Takeaways Researchers have set a new world record for fastest whole human genome sequencing The team completed…

GGenetics

October 17, 2025

Key Takeaways Researchers have set a new world record for fastest whole human genome sequencing The team completed…

GGenetics

SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology

October 16, 2025

Model residuals of linear regression and logistic regression Linear regression and logistic regression are regular models to fit…

GGenetics

SAGPEK: fast and flexible approach to identify genotypes of Sanger sequencing data | BMC Bioinformatics

October 14, 2025

Software architecture SAGPEK mainly processes Sanger sequencing results of two kinds of samples: diploids such as humans and…

GGenetics

A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology

October 10, 2025

K-proportion and gene homeostasis Z-Index identify regulatory genes As cells of the same type and in the same…

GGenetics

Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology

October 3, 2025

Model overview We consider the following model to incorporate both additive and interaction effects: $${Y}_{i}={\sum }_{j=1}^{M}{G}_{ji}{\beta }_{j}+{\sum }_{j=1}^{M}{S}_{ji}{\gamma…

GGenetics

Advances in haplotype phasing and genotype imputation

September 24, 2025

Voight, B. F., Kudaravalli, S., Wen, X. & Pritchard, J. K. A map of recent positive selection in…

GGenetics

September 23, 2025

Mastermind® FLEX Data powers Compass Bioinformatics’s InheriNext® platform, bringing unparalleled genomic evidence to leading institutes across US, Japan,…