Computational Biology/Bioinformatics

AlphaFold Database Structure Extractor: a web server and API to download AlphaFold structures using common protein accessions | BMC Bioinformatics

November 25, 2025

Background The AlphaFoldDB Structure Extractor (https://project.iith.ac.in/sharmaglab/alphafoldextractor/) is an open-access web server and API toolkit designed to facilitate the…

SScience

MultiModalGraphics: an R package for graphical integration of multi-omics datasets | BMC Bioinformatics

October 21, 2025

MultiModalGraphics is an R/Bioconductor package that leverages object-oriented S4 classes to visualize multimodal biological data with embedded statistical…

TTechnology

Topology-aware functional similarity: integrating extended neighborhoods via exponential attenuation | BMC Bioinformatics

October 21, 2025

Experiment datasets This study systematically evaluates protein-protein interaction (PPI) networks from four model organisms: Saccharomyces cerevisiae, Arabidopsis thaliana,…

GGenetics

SAGPEK: fast and flexible approach to identify genotypes of Sanger sequencing data | BMC Bioinformatics

October 14, 2025

Software architecture SAGPEK mainly processes Sanger sequencing results of two kinds of samples: diploids such as humans and…