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Browsing Tag

Plant Genetics and Genomics

19 posts
SScience
Evolutionary diversification and expressional profile of adrenergic receptors in the Pacific oyster Crassostrea gigas | BMC Genomics
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Evolutionary diversification and expressional profile of adrenergic receptors in the Pacific oyster Crassostrea gigas | BMC Genomics

  • October 23, 2025
Motiejunaite J, Amar L, Vidal-Petiot E. Adrenergic receptors and cardiovascular effects of catecholamines. Ann Endocrinol. 2021;82:193–7. Google Scholar …
SScience
ParaRef: a decontaminated reference database for parasite detection in ancient and modern metagenomic datasets | Genome Biology
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ParaRef: a decontaminated reference database for parasite detection in ancient and modern metagenomic datasets | Genome Biology

  • October 23, 2025
Blake DP, Betson M. One health: parasites and beyond. Parasitology. 2017;144:1–6. PubMed  Google Scholar  Coulter JBS. Global importance…
SScience
iNOME-seq: in vivo simultaneous genome-wide mapping of chromatin accessibility, nucleosome positioning, DNA-binding protein sites, and DNA methylation in Arabidopsis | Genome Biology
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iNOME-seq: in vivo simultaneous genome-wide mapping of chromatin accessibility, nucleosome positioning, DNA-binding protein sites, and DNA methylation in Arabidopsis | Genome Biology

  • October 22, 2025
Plant lines and growth conditions The plant lines used in this study were derived from A. thaliana wild-type…
GGenetics
Natural selection exerted by historical coronavirus epidemic(s): comparative genetic analysis in China Kadoorie Biobank and UK Biobank | BMC Genomics
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Natural selection exerted by historical coronavirus epidemic(s): comparative genetic analysis in China Kadoorie Biobank and UK Biobank | BMC Genomics

  • October 21, 2025
AppendixMethodsStatistics and reproducibility The details of each analysis are outlined in the methods section and all of the…
GGenetics
SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology
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SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology

  • October 16, 2025
Model residuals of linear regression and logistic regression Linear regression and logistic regression are regular models to fit…
GGenetics
Genetic variation and genome-enabled selection of white lupin for key seed quality traits | BMC Genomics
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Genetic variation and genome-enabled selection of white lupin for key seed quality traits | BMC Genomics

  • October 16, 2025
Foyer CH, Lam H-M, Nguyen HT, Siddique KHM, Varshney RK, Colmer TD, et al. Neglecting legumes has compromised…
GGenetics
A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology
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A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology

  • October 10, 2025
K-proportion and gene homeostasis Z-Index identify regulatory genes As cells of the same type and in the same…
TTechnology
The genetic influence of sex on gene expression for blood in pigs | BMC Genomics
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The genetic influence of sex on gene expression for blood in pigs | BMC Genomics

  • October 9, 2025
Data summary We collected 386 blood samples with matched genotype and gene expression data from the PigGTEx project…
GGenetics
Genomic predictions for growth and feed efficiency traits in a duck breeding population | BMC Genomics
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Genomic predictions for growth and feed efficiency traits in a duck breeding population | BMC Genomics

  • October 8, 2025
Animal population and phenotype data This study used a breeding population of Zhongxin white duck (a commercial breed…
GGenetics
Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology
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Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology

  • October 3, 2025
Model overview We consider the following model to incorporate both additive and interaction effects: $${Y}_{i}={\sum }_{j=1}^{M}{G}_{ji}{\beta }_{j}+{\sum }_{j=1}^{M}{S}_{ji}{\gamma…
GGenetics
Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics
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Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

  • October 3, 2025
Preparation of preliminary data In all samples, the proportion of clean reads was higher than 99.5% (Table S2),…
SScience
Chromosome-level genome assembly for Sichuan taimen (Hucho bleekeri) reveals the extraordinary tandem repeat proportions and its persistent population shrinkage | BMC Genomics
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Chromosome-level genome assembly for Sichuan taimen (Hucho bleekeri) reveals the extraordinary tandem repeat proportions and its persistent population shrinkage | BMC Genomics

  • September 26, 2025
Wang K, Zhang SH, Wang DQ, Wu JM, Wang CY, Wei QW. Conservation genetics assessment and phylogenetic relationships…
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