{"id":44517,"date":"2025-09-26T11:43:13","date_gmt":"2025-09-26T11:43:13","guid":{"rendered":"https:\/\/www.newsbeep.com\/ie\/44517\/"},"modified":"2025-09-26T11:43:13","modified_gmt":"2025-09-26T11:43:13","slug":"chromosome-level-genome-assembly-for-sichuan-taimen-hucho-bleekeri-reveals-the-extraordinary-tandem-repeat-proportions-and-its-persistent-population-shrinkage-bmc-genomics","status":"publish","type":"post","link":"https:\/\/www.newsbeep.com\/ie\/44517\/","title":{"rendered":"Chromosome-level genome assembly for Sichuan taimen (Hucho bleekeri) reveals the extraordinary tandem repeat proportions and its persistent population shrinkage | BMC Genomics"},"content":{"rendered":"<p class=\"c-article-references__text\" id=\"ref-CR1\">Wang K, Zhang SH, Wang DQ, Wu JM, Wang CY, Wei QW. Conservation genetics assessment and phylogenetic relationships of critically endangered Hucho bleekeri in China. J Appl Ichthyol. 2016;32(2):343\u20139.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1111\/jai.13018\" data-track-item_id=\"10.1111\/jai.13018\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1111%2Fjai.13018\" aria-label=\"Article reference 1\" data-doi=\"10.1111\/jai.13018\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 1\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Conservation%20genetics%20assessment%20and%20phylogenetic%20relationships%20of%20critically%20endangered%20Hucho%20bleekeri%20in%20China&amp;journal=J%20Appl%20Ichthyol&amp;doi=10.1111%2Fjai.13018&amp;volume=32&amp;issue=2&amp;pages=343-9&amp;publication_year=2016&amp;author=Wang%2CK&amp;author=Zhang%2CSH&amp;author=Wang%2CDQ&amp;author=Wu%2CJM&amp;author=Wang%2CCY&amp;author=Wei%2CQW\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR2\">Hu M, Wang Y, Cao L, Xiong B. Threatened fishes of the world: Hucho bleekeri kimura, 1934 (Salmonidae). Environ Biol Fishes. 2008;82:385\u20136.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1007\/s10641-007-9299-1\" data-track-item_id=\"10.1007\/s10641-007-9299-1\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1007\/s10641-007-9299-1\" aria-label=\"Article reference 2\" data-doi=\"10.1007\/s10641-007-9299-1\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 2\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Threatened%20fishes%20of%20the%20world%3A%20Hucho%20bleekeri%20kimura%2C%201934%20%28Salmonidae%29&amp;journal=Environ%20Biol%20Fishes&amp;doi=10.1007%2Fs10641-007-9299-1&amp;volume=82&amp;pages=385-6&amp;publication_year=2008&amp;author=Hu%2CM&amp;author=Wang%2CY&amp;author=Cao%2CL&amp;author=Xiong%2CB\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR3\">Allendorf FW, Hard JJ. Human-induced evolution caused by unnatural selection through harvest of wild animals. Proc Natl Acad Sci USA. 2009;106(Suppl 1):9987\u201394.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1073\/pnas.0901069106\" data-track-item_id=\"10.1073\/pnas.0901069106\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1073%2Fpnas.0901069106\" aria-label=\"Article reference 3\" data-doi=\"10.1073\/pnas.0901069106\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD1MXotFKnsLc%3D\" aria-label=\"CAS reference 3\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=19528656\" aria-label=\"PubMed reference 3\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC2702803\" aria-label=\"PubMed Central reference 3\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 3\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Human-induced%20evolution%20caused%20by%20unnatural%20selection%20through%20harvest%20of%20wild%20animals&amp;journal=Proc%20Natl%20Acad%20Sci%20USA&amp;doi=10.1073%2Fpnas.0901069106&amp;volume=106&amp;issue=Suppl%201&amp;pages=9987-94&amp;publication_year=2009&amp;author=Allendorf%2CFW&amp;author=Hard%2CJJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR4\">Sadovy de Mitcheson Y, Craig MT, Bertoncini AA, Carpenter KE, Cheung WW, Choat JH, Cornish AS, Fennessy ST, Ferreira BP, Heemstra PCJF. Fishing groupers towards extinction: a global assessment of threats and extinction risks in a billion dollar fishery. Fish Fish. 2013;14(2):119\u201336.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1111\/j.1467-2979.2011.00455.x\" data-track-item_id=\"10.1111\/j.1467-2979.2011.00455.x\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1111%2Fj.1467-2979.2011.00455.x\" aria-label=\"Article reference 4\" data-doi=\"10.1111\/j.1467-2979.2011.00455.x\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 4\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Fishing%20groupers%20towards%20extinction%3A%20a%20global%20assessment%20of%20threats%20and%20extinction%20risks%20in%20a%20billion%20dollar%20fishery&amp;journal=Fish%20Fish&amp;doi=10.1111%2Fj.1467-2979.2011.00455.x&amp;volume=14&amp;issue=2&amp;pages=119-36&amp;publication_year=2013&amp;author=Sadovy%20de%20Mitcheson%2CY&amp;author=Craig%2CMT&amp;author=Bertoncini%2CAA&amp;author=Carpenter%2CKE&amp;author=Cheung%2CWW&amp;author=Choat%2CJH&amp;author=Cornish%2CAS&amp;author=Fennessy%2CST&amp;author=Ferreira%2CBP&amp;author=Heemstra%2CPCJF\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR5\">Sung W, Peiqi Y, Yiyu C, Commission ESS. China red data book of endangered animals: pisces. Beijing: Science; 1998.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 5\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=China%20red%20data%20book%20of%20endangered%20animals%3A%20pisces&amp;publication_year=1998&amp;author=Sung%2CW&amp;author=Peiqi%2CY&amp;author=Yiyu%2CC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR6\">Song Z. Hucho bleekeri. The IUCN Red List of Threatened Species. Version 2014.3. 2012.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR7\">Allendorf FW, Hohenlohe PA, Luikart G. Genomics and the future of conservation genetics. Nat Rev Genet. 2010;11(10):697\u2013709.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/nrg2844\" data-track-item_id=\"10.1038\/nrg2844\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fnrg2844\" aria-label=\"Article reference 7\" data-doi=\"10.1038\/nrg2844\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3cXhtFyju7%2FP\" aria-label=\"CAS reference 7\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=20847747\" aria-label=\"PubMed reference 7\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 7\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Genomics%20and%20the%20future%20of%20conservation%20genetics&amp;journal=Nat%20Rev%20Genet&amp;doi=10.1038%2Fnrg2844&amp;volume=11&amp;issue=10&amp;pages=697-709&amp;publication_year=2010&amp;author=Allendorf%2CFW&amp;author=Hohenlohe%2CPA&amp;author=Luikart%2CG\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR8\">Kohn MH, Murphy WJ, Ostrander EA, Wayne RK. Genomics and conservation genetics. Trends Ecol Evol. 2006;21(11):629\u201337.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.tree.2006.08.001\" data-track-item_id=\"10.1016\/j.tree.2006.08.001\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.tree.2006.08.001\" aria-label=\"Article reference 8\" data-doi=\"10.1016\/j.tree.2006.08.001\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=16908089\" aria-label=\"PubMed reference 8\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 8\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Genomics%20and%20conservation%20genetics&amp;journal=Trends%20Ecol%20Evol&amp;doi=10.1016%2Fj.tree.2006.08.001&amp;volume=21&amp;issue=11&amp;pages=629-37&amp;publication_year=2006&amp;author=Kohn%2CMH&amp;author=Murphy%2CWJ&amp;author=Ostrander%2CEA&amp;author=Wayne%2CRK\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR9\">Xue DX, Xing TF, Liu JX. A high-quality chromosome-level genome of the endangered roughskin sculpin provides insights into its evolution and adaptation. Mol Ecol Resour. 2022;22(5):1892\u2013905.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1111\/1755-0998.13582\" data-track-item_id=\"10.1111\/1755-0998.13582\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1111%2F1755-0998.13582\" aria-label=\"Article reference 9\" data-doi=\"10.1111\/1755-0998.13582\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38XkvVartrY%3D\" aria-label=\"CAS reference 9\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35007382\" aria-label=\"PubMed reference 9\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 9\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=A%20high-quality%20chromosome-level%20genome%20of%20the%20endangered%20roughskin%20sculpin%20provides%20insights%20into%20its%20evolution%20and%20adaptation&amp;journal=Mol%20Ecol%20Resour&amp;doi=10.1111%2F1755-0998.13582&amp;volume=22&amp;issue=5&amp;pages=1892-905&amp;publication_year=2022&amp;author=Xue%2CDX&amp;author=Xing%2CTF&amp;author=Liu%2CJX\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR10\">Liu X, Zeng H, Wang C, Bo J, Gan X, Fang C, et al. Improved genome assembly of Chinese sucker (Myxocyprinus asiaticus) provides insights into the identification and characterization of pharyngeal teeth related maker genes in cyprinoidei. Water Biology and Security. 2022;1(3):100049.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.watbs.2022.100049\" data-track-item_id=\"10.1016\/j.watbs.2022.100049\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.watbs.2022.100049\" aria-label=\"Article reference 10\" data-doi=\"10.1016\/j.watbs.2022.100049\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 10\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Improved%20genome%20assembly%20of%20Chinese%20sucker%20%28Myxocyprinus%20asiaticus%29%20provides%20insights%20into%20the%20identification%20and%20characterization%20of%20pharyngeal%20teeth%20related%20maker%20genes%20in%20cyprinoidei&amp;journal=Water%20Biology%20and%20Security&amp;doi=10.1016%2Fj.watbs.2022.100049&amp;volume=1&amp;issue=3&amp;publication_year=2022&amp;author=Liu%2CX&amp;author=Zeng%2CH&amp;author=Wang%2CC&amp;author=Bo%2CJ&amp;author=Gan%2CX&amp;author=Fang%2CC&amp;author=He%2CS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR11\">Zhu W, Wang Z, Li H, Li P, Ni L, Jiao L, et al. A chromosome-level genome of Brachymystax tsinlingensis provides resources and insights into salmonids evolution. G3 Genes|Genomes|Genetics. 2022;12(8):jkac162.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/g3journal\/jkac162\" data-track-item_id=\"10.1093\/g3journal\/jkac162\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fg3journal%2Fjkac162\" aria-label=\"Article reference 11\" data-doi=\"10.1093\/g3journal\/jkac162\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXktl2rsb4%3D\" aria-label=\"CAS reference 11\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35758619\" aria-label=\"PubMed reference 11\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9339311\" aria-label=\"PubMed Central reference 11\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 11\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=A%20chromosome-level%20genome%20of%20Brachymystax%20tsinlingensis%20provides%20resources%20and%20insights%20into%20salmonids%20evolution&amp;journal=G3%20Genes%7CGenomes%7CGenetics&amp;doi=10.1093%2Fg3journal%2Fjkac162&amp;volume=12&amp;issue=8&amp;publication_year=2022&amp;author=Zhu%2CW&amp;author=Wang%2CZ&amp;author=Li%2CH&amp;author=Li%2CP&amp;author=Ni%2CL&amp;author=Jiao%2CL&amp;author=Ren%2CY&amp;author=You%2CP\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR12\">Brandies P, Peel E, Hogg CJ, Belov K. The value of reference genomes in the conservation of threatened species. Genes (Basel). 2019;10(11):846.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.3390\/genes10110846\" data-track-item_id=\"10.3390\/genes10110846\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.3390%2Fgenes10110846\" aria-label=\"Article reference 12\" data-doi=\"10.3390\/genes10110846\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXisVahsLnN\" aria-label=\"CAS reference 12\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=31717707\" aria-label=\"PubMed reference 12\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 12\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20value%20of%20reference%20genomes%20in%20the%20conservation%20of%20threatened%20species&amp;journal=Genes%20%28Basel%29&amp;doi=10.3390%2Fgenes10110846&amp;volume=10&amp;issue=11&amp;publication_year=2019&amp;author=Brandies%2CP&amp;author=Peel%2CE&amp;author=Hogg%2CCJ&amp;author=Belov%2CK\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR13\">Waples RS, Naish KA, Primmer CR. Conservation and management of salmon in the age of genomics. Annu Rev Anim Biosci. 2020;8:117\u201343.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1146\/annurev-animal-021419-083617\" data-track-item_id=\"10.1146\/annurev-animal-021419-083617\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1146%2Fannurev-animal-021419-083617\" aria-label=\"Article reference 13\" data-doi=\"10.1146\/annurev-animal-021419-083617\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=31730428\" aria-label=\"PubMed reference 13\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 13\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Conservation%20and%20management%20of%20salmon%20in%20the%20age%20of%20genomics&amp;journal=Annu%20Rev%20Anim%20Biosci&amp;doi=10.1146%2Fannurev-animal-021419-083617&amp;volume=8&amp;pages=117-43&amp;publication_year=2020&amp;author=Waples%2CRS&amp;author=Naish%2CKA&amp;author=Primmer%2CCR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR14\">Chen Y, Yang H, Gong Q, Chen Y, Tu Q, Li H. Isolation and characterization of 34 SNP markers in Hucho bleekeri. Conserv Genet Resour. 2020;12:157\u201360.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1007\/s12686-018-1078-0\" data-track-item_id=\"10.1007\/s12686-018-1078-0\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1007\/s12686-018-1078-0\" aria-label=\"Article reference 14\" data-doi=\"10.1007\/s12686-018-1078-0\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 14\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Isolation%20and%20characterization%20of%2034%20SNP%20markers%20in%20Hucho%20bleekeri&amp;journal=Conserv%20Genet%20Resour&amp;doi=10.1007%2Fs12686-018-1078-0&amp;volume=12&amp;pages=157-60&amp;publication_year=2020&amp;author=Chen%2CY&amp;author=Yang%2CH&amp;author=Gong%2CQ&amp;author=Chen%2CY&amp;author=Tu%2CQ&amp;author=Li%2CH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR15\">Zhang Y, Luan P, Ren G, Hu G, Yin J. Estimating the inbreeding level and genetic relatedness in an isolated population of critically endangered Sichuan Taimen (Hucho bleekeri) using genome-wide SNP markers. Ecol Evol. 2020;10(3):1390\u2013400.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1002\/ece3.5994\" data-track-item_id=\"10.1002\/ece3.5994\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1002%2Fece3.5994\" aria-label=\"Article reference 15\" data-doi=\"10.1002\/ece3.5994\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=32076522\" aria-label=\"PubMed reference 15\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7029085\" aria-label=\"PubMed Central reference 15\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 15\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Estimating%20the%20inbreeding%20level%20and%20genetic%20relatedness%20in%20an%20isolated%20population%20of%20critically%20endangered%20Sichuan%20Taimen%20%28Hucho%20bleekeri%29%20using%20genome-wide%20SNP%20markers&amp;journal=Ecol%20Evol&amp;doi=10.1002%2Fece3.5994&amp;volume=10&amp;issue=3&amp;pages=1390-400&amp;publication_year=2020&amp;author=Zhang%2CY&amp;author=Luan%2CP&amp;author=Ren%2CG&amp;author=Hu%2CG&amp;author=Yin%2CJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR16\">Chen Y, Yang H, Chen Y, Song M, Liu B, Song J, et al. Full-length transcriptome sequencing and identification of immune-related genes in the critically endangered Hucho bleekeri. Dev Comp Immunol. 2021;116:103934.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.dci.2020.103934\" data-track-item_id=\"10.1016\/j.dci.2020.103934\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.dci.2020.103934\" aria-label=\"Article reference 16\" data-doi=\"10.1016\/j.dci.2020.103934\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXlvFKgtQ%3D%3D\" aria-label=\"CAS reference 16\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=33242569\" aria-label=\"PubMed reference 16\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 16\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Full-length%20transcriptome%20sequencing%20and%20identification%20of%20immune-related%20genes%20in%20the%20critically%20endangered%20Hucho%20bleekeri&amp;journal=Dev%20Comp%20Immunol&amp;doi=10.1016%2Fj.dci.2020.103934&amp;volume=116&amp;publication_year=2021&amp;author=Chen%2CY&amp;author=Yang%2CH&amp;author=Chen%2CY&amp;author=Song%2CM&amp;author=Liu%2CB&amp;author=Song%2CJ&amp;author=Liu%2CX&amp;author=Li%2CH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR17\">Dysin AP, Shcherbakov YS, Nikolaeva OA, Terletskii VP, Tyshchenko VI, Dementieva NV. Salmonidae genome: features, evolutionary and phylogenetic characteristics. Genes. 2022;13(12):2221.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.3390\/genes13122221\" data-track-item_id=\"10.3390\/genes13122221\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.3390%2Fgenes13122221\" aria-label=\"Article reference 17\" data-doi=\"10.3390\/genes13122221\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXksVGktA%3D%3D\" aria-label=\"CAS reference 17\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=36553488\" aria-label=\"PubMed reference 17\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9778375\" aria-label=\"PubMed Central reference 17\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 17\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Salmonidae%20genome%3A%20features%2C%20evolutionary%20and%20phylogenetic%20characteristics&amp;journal=Genes&amp;doi=10.3390%2Fgenes13122221&amp;volume=13&amp;issue=12&amp;publication_year=2022&amp;author=Dysin%2CAP&amp;author=Shcherbakov%2CYS&amp;author=Nikolaeva%2COA&amp;author=Terletskii%2CVP&amp;author=Tyshchenko%2CVI&amp;author=Dementieva%2CNV\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR18\">Robertson FM, Gundappa MK, Grammes F, Hvidsten TR, Redmond AK, Lien S, Martin SAM, Holland PWH, Sandve SR, Macqueen DJ. Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification. Genome Biol. 2017;18(1):111.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1186\/s13059-017-1241-z\" data-track-item_id=\"10.1186\/s13059-017-1241-z\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1186\/s13059-017-1241-z\" aria-label=\"Article reference 18\" data-doi=\"10.1186\/s13059-017-1241-z\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=28615063\" aria-label=\"PubMed reference 18\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5470254\" aria-label=\"PubMed Central reference 18\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 18\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Lineage-specific%20rediploidization%20is%20a%20mechanism%20to%20explain%20time-lags%20between%20genome%20duplication%20and%20evolutionary%20diversification&amp;journal=Genome%20Biol&amp;doi=10.1186%2Fs13059-017-1241-z&amp;volume=18&amp;issue=1&amp;publication_year=2017&amp;author=Robertson%2CFM&amp;author=Gundappa%2CMK&amp;author=Grammes%2CF&amp;author=Hvidsten%2CTR&amp;author=Redmond%2CAK&amp;author=Lien%2CS&amp;author=Martin%2CSAM&amp;author=Holland%2CPWH&amp;author=Sandve%2CSR&amp;author=Macqueen%2CDJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR19\">Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, et al. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome. Nat Biotechnol. 2019;37(10):1155\u201362.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41587-019-0217-9\" data-track-item_id=\"10.1038\/s41587-019-0217-9\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41587-019-0217-9\" aria-label=\"Article reference 19\" data-doi=\"10.1038\/s41587-019-0217-9\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXhsFKhtbjN\" aria-label=\"CAS reference 19\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=31406327\" aria-label=\"PubMed reference 19\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6776680\" aria-label=\"PubMed Central reference 19\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 19\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Accurate%20circular%20consensus%20long-read%20sequencing%20improves%20variant%20detection%20and%20assembly%20of%20a%20human%20genome&amp;journal=Nat%20Biotechnol&amp;doi=10.1038%2Fs41587-019-0217-9&amp;volume=37&amp;issue=10&amp;pages=1155-62&amp;publication_year=2019&amp;author=Wenger%2CAM&amp;author=Peluso%2CP&amp;author=Rowell%2CWJ&amp;author=Chang%2CPC&amp;author=Hall%2CRJ&amp;author=Concepcion%2CGT&amp;author=Ebler%2CJ&amp;author=Fungtammasan%2CA&amp;author=Kolesnikov%2CA&amp;author=Olson%2CND\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR20\">Adams RH, Blackmon H, Reyes-Velasco J, Schield DR, Card DC, Andrew AL, Waynewood N, Castoe TA. Microsatellite landscape evolutionary dynamics across 450 million years of vertebrate genome evolution. Genome. 2016;59(5):295\u2013310.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1139\/gen-2015-0124\" data-track-item_id=\"10.1139\/gen-2015-0124\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1139%2Fgen-2015-0124\" aria-label=\"Article reference 20\" data-doi=\"10.1139\/gen-2015-0124\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC28Xlsl2nu7g%3D\" aria-label=\"CAS reference 20\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=27064176\" aria-label=\"PubMed reference 20\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 20\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Microsatellite%20landscape%20evolutionary%20dynamics%20across%20450%20million%20years%20of%20vertebrate%20genome%20evolution&amp;journal=Genome&amp;doi=10.1139%2Fgen-2015-0124&amp;volume=59&amp;issue=5&amp;pages=295-310&amp;publication_year=2016&amp;author=Adams%2CRH&amp;author=Blackmon%2CH&amp;author=Reyes-Velasco%2CJ&amp;author=Schield%2CDR&amp;author=Card%2CDC&amp;author=Andrew%2CAL&amp;author=Waynewood%2CN&amp;author=Castoe%2CTA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR21\">Horreo JL. Revisiting the mitogenomic phylogeny of salmoninae: new insights thanks to recent sequencing advances. PeerJ. 2017;5:e3828.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.7717\/peerj.3828\" data-track-item_id=\"10.7717\/peerj.3828\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.7717%2Fpeerj.3828\" aria-label=\"Article reference 21\" data-doi=\"10.7717\/peerj.3828\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=28948107\" aria-label=\"PubMed reference 21\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5609519\" aria-label=\"PubMed Central reference 21\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 21\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Revisiting%20the%20mitogenomic%20phylogeny%20of%20salmoninae%3A%20new%20insights%20thanks%20to%20recent%20sequencing%20advances&amp;journal=PeerJ&amp;doi=10.7717%2Fpeerj.3828&amp;volume=5&amp;publication_year=2017&amp;author=Horreo%2CJL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR22\">Lecaudey LA, Schliewen UK, Osinov AG, Taylor EB, Bernatchez L, Weiss SJ. Inferring phylogenetic structure, hybridization and divergence times within salmoninae (Teleostei: Salmonidae) using RAD-sequencing. Mol Phylogenet Evol. 2018;124:82\u201399.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.ympev.2018.02.022\" data-track-item_id=\"10.1016\/j.ympev.2018.02.022\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.ympev.2018.02.022\" aria-label=\"Article reference 22\" data-doi=\"10.1016\/j.ympev.2018.02.022\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1cXlsV2nsr0%3D\" aria-label=\"CAS reference 22\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29477383\" aria-label=\"PubMed reference 22\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 22\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Inferring%20phylogenetic%20structure%2C%20hybridization%20and%20divergence%20times%20within%20salmoninae%20%28Teleostei%3A%20Salmonidae%29%20using%20RAD-sequencing&amp;journal=Mol%20Phylogenet%20Evol&amp;doi=10.1016%2Fj.ympev.2018.02.022&amp;volume=124&amp;pages=82-99&amp;publication_year=2018&amp;author=Lecaudey%2CLA&amp;author=Schliewen%2CUK&amp;author=Osinov%2CAG&amp;author=Taylor%2CEB&amp;author=Bernatchez%2CL&amp;author=Weiss%2CSJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR23\">Galland LM, Simmons JB, Jahner JP, Luzuriaga-Neira AR, Sloat MR, Chandra S, et al. Hierarchical genetic structure and implications for conservation of the world\u2019s largest salmonid, Hucho taimen. Sci Rep. 2021;11(1):20508.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41598-021-99530-3\" data-track-item_id=\"10.1038\/s41598-021-99530-3\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41598-021-99530-3\" aria-label=\"Article reference 23\" data-doi=\"10.1038\/s41598-021-99530-3\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXit1GlsLvN\" aria-label=\"CAS reference 23\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=34654859\" aria-label=\"PubMed reference 23\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8520000\" aria-label=\"PubMed Central reference 23\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 23\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Hierarchical%20genetic%20structure%20and%20implications%20for%20conservation%20of%20the%20world%E2%80%99s%20largest%20salmonid%2C%20Hucho%20taimen&amp;journal=Sci%20Rep&amp;doi=10.1038%2Fs41598-021-99530-3&amp;volume=11&amp;issue=1&amp;publication_year=2021&amp;author=Galland%2CLM&amp;author=Simmons%2CJB&amp;author=Jahner%2CJP&amp;author=Luzuriaga-Neira%2CAR&amp;author=Sloat%2CMR&amp;author=Chandra%2CS&amp;author=Hogan%2CZ&amp;author=Jensen%2COP&amp;author=Parchman%2CTL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR24\">Kaus A, Michalski S, H\u00e4nfling B, Karthe D, Borchardt D, Durka W. Fish conservation in the land of steppe and sky: evolutionarily significant units of threatened salmonid species in Mongolia mirror major river basins. Ecol Evol. 2019;9(6):3416\u201333.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1002\/ece3.4974\" data-track-item_id=\"10.1002\/ece3.4974\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1002%2Fece3.4974\" aria-label=\"Article reference 24\" data-doi=\"10.1002\/ece3.4974\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=30962902\" aria-label=\"PubMed reference 24\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6434579\" aria-label=\"PubMed Central reference 24\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 24\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Fish%20conservation%20in%20the%20land%20of%20steppe%20and%20sky%3A%20evolutionarily%20significant%20units%20of%20threatened%20salmonid%20species%20in%20Mongolia%20mirror%20major%20river%20basins&amp;journal=Ecol%20Evol&amp;doi=10.1002%2Fece3.4974&amp;volume=9&amp;issue=6&amp;pages=3416-33&amp;publication_year=2019&amp;author=Kaus%2CA&amp;author=Michalski%2CS&amp;author=H%C3%A4nfling%2CB&amp;author=Karthe%2CD&amp;author=Borchardt%2CD&amp;author=Durka%2CW\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR25\">Kucinski M, Fopp-Bayat D. Phylogenetic analysis of Brachymystax and Hucho genera\u2014summary on evolutionary status within the salmoninae subfamily. J Appl Ichthyol. 2022;38(4):403\u201311.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1111\/jai.14324\" data-track-item_id=\"10.1111\/jai.14324\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1111%2Fjai.14324\" aria-label=\"Article reference 25\" data-doi=\"10.1111\/jai.14324\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38XhsVOhs7%2FE\" aria-label=\"CAS reference 25\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 25\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Phylogenetic%20analysis%20of%20Brachymystax%20and%20Hucho%20genera%E2%80%94summary%20on%20evolutionary%20status%20within%20the%20salmoninae%20subfamily&amp;journal=J%20Appl%20Ichthyol&amp;doi=10.1111%2Fjai.14324&amp;volume=38&amp;issue=4&amp;pages=403-11&amp;publication_year=2022&amp;author=Kucinski%2CM&amp;author=Fopp-Bayat%2CD\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR26\">Hilgers L, Liu S, Jensen A, Brown T, Cousins T, Schweiger R, et al. Avoidable false PSMC population size peaks occur across numerous studies. Curr Biol. 2025;35(4):927-e930923.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.cub.2024.09.028\" data-track-item_id=\"10.1016\/j.cub.2024.09.028\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.cub.2024.09.028\" aria-label=\"Article reference 26\" data-doi=\"10.1016\/j.cub.2024.09.028\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB2MXjtFWhtLw%3D\" aria-label=\"CAS reference 26\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=39919744\" aria-label=\"PubMed reference 26\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 26\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Avoidable%20false%20PSMC%20population%20size%20peaks%20occur%20across%20numerous%20studies&amp;journal=Curr%20Biol&amp;doi=10.1016%2Fj.cub.2024.09.028&amp;volume=35&amp;issue=4&amp;pages=927-e930923&amp;publication_year=2025&amp;author=Hilgers%2CL&amp;author=Liu%2CS&amp;author=Jensen%2CA&amp;author=Brown%2CT&amp;author=Cousins%2CT&amp;author=Schweiger%2CR&amp;author=Guschanski%2CK&amp;author=Hiller%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR27\">Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, et al. The Atlantic salmon genome provides insights into rediploidization. Nature. 2016;533(7602):200\u20135.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/nature17164\" data-track-item_id=\"10.1038\/nature17164\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fnature17164\" aria-label=\"Article reference 27\" data-doi=\"10.1038\/nature17164\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC28Xmt1ekurc%3D\" aria-label=\"CAS reference 27\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=27088604\" aria-label=\"PubMed reference 27\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8127823\" aria-label=\"PubMed Central reference 27\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 27\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20Atlantic%20salmon%20genome%20provides%20insights%20into%20rediploidization&amp;journal=Nature&amp;doi=10.1038%2Fnature17164&amp;volume=533&amp;issue=7602&amp;pages=200-5&amp;publication_year=2016&amp;author=Lien%2CS&amp;author=Koop%2CBF&amp;author=Sandve%2CSR&amp;author=Miller%2CJR&amp;author=Kent%2CMP&amp;author=Nome%2CT&amp;author=Hvidsten%2CTR&amp;author=Leong%2CJS&amp;author=Minkley%2CDR&amp;author=Zimin%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR28\">Gundappa MK, To T-H, Gr\u00f8nvold L, Martin SAM, Lien S, Geist J, et al. Genome-wide reconstruction of rediploidization following autopolyploidization across one hundred million years of salmonid evolution. Mol Biol Evol. 2022;39(1):msab310.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/molbev\/msab310\" data-track-item_id=\"10.1093\/molbev\/msab310\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fmolbev%2Fmsab310\" aria-label=\"Article reference 28\" data-doi=\"10.1093\/molbev\/msab310\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38XjvFKgt7s%3D\" aria-label=\"CAS reference 28\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=34718723\" aria-label=\"PubMed reference 28\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 28\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Genome-wide%20reconstruction%20of%20rediploidization%20following%20autopolyploidization%20across%20one%20hundred%20million%20years%20of%20salmonid%20evolution&amp;journal=Mol%20Biol%20Evol&amp;doi=10.1093%2Fmolbev%2Fmsab310&amp;volume=39&amp;issue=1&amp;publication_year=2022&amp;author=Gundappa%2CMK&amp;author=To%2CT-H&amp;author=Gr%C3%B8nvold%2CL&amp;author=Martin%2CSAM&amp;author=Lien%2CS&amp;author=Geist%2CJ&amp;author=Hazlerigg%2CD&amp;author=Sandve%2CSR&amp;author=Macqueen%2CDJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR29\">Smith SR, Normandeau E, Djambazian H, Nawarathna PM, Berube P, Muir AM, et al. A chromosome-anchored genome assembly for lake trout (Salvelinus namaycush). Mol Ecol Resour. 2022;22(2):679\u201394.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1111\/1755-0998.13483\" data-track-item_id=\"10.1111\/1755-0998.13483\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1111%2F1755-0998.13483\" aria-label=\"Article reference 29\" data-doi=\"10.1111\/1755-0998.13483\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXit1eltbfL\" aria-label=\"CAS reference 29\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=34351050\" aria-label=\"PubMed reference 29\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 29\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=A%20chromosome-anchored%20genome%20assembly%20for%20lake%20trout%20%28Salvelinus%20namaycush%29&amp;journal=Mol%20Ecol%20Resour&amp;doi=10.1111%2F1755-0998.13483&amp;volume=22&amp;issue=2&amp;pages=679-94&amp;publication_year=2022&amp;author=Smith%2CSR&amp;author=Normandeau%2CE&amp;author=Djambazian%2CH&amp;author=Nawarathna%2CPM&amp;author=Berube%2CP&amp;author=Muir%2CAM&amp;author=Ragoussis%2CJ&amp;author=Penney%2CCM&amp;author=Scribner%2CKT&amp;author=Luikart%2CG\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR30\">T\u00f8rresen OK, Star B, Jentoft S, Reinar WB, Grove H, Miller JR, et al. An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics. 2017;18(1):95.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1186\/s12864-016-3448-x\" data-track-item_id=\"10.1186\/s12864-016-3448-x\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1186\/s12864-016-3448-x\" aria-label=\"Article reference 30\" data-doi=\"10.1186\/s12864-016-3448-x\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=28100185\" aria-label=\"PubMed reference 30\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5241972\" aria-label=\"PubMed Central reference 30\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 30\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=An%20improved%20genome%20assembly%20uncovers%20prolific%20tandem%20repeats%20in%20Atlantic%20cod&amp;journal=BMC%20Genomics&amp;doi=10.1186%2Fs12864-016-3448-x&amp;volume=18&amp;issue=1&amp;publication_year=2017&amp;author=T%C3%B8rresen%2COK&amp;author=Star%2CB&amp;author=Jentoft%2CS&amp;author=Reinar%2CWB&amp;author=Grove%2CH&amp;author=Miller%2CJR&amp;author=Walenz%2CBP&amp;author=Knight%2CJ&amp;author=Ekholm%2CJM&amp;author=Peluso%2CP\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR31\">Treangen TJ, Salzberg SL. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet. 2011;13(1):36\u201346.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/nrg3117\" data-track-item_id=\"10.1038\/nrg3117\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fnrg3117\" aria-label=\"Article reference 31\" data-doi=\"10.1038\/nrg3117\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=22124482\" aria-label=\"PubMed reference 31\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3324860\" aria-label=\"PubMed Central reference 31\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 31\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Repetitive%20DNA%20and%20next-generation%20sequencing%3A%20computational%20challenges%20and%20solutions&amp;journal=Nat%20Rev%20Genet&amp;doi=10.1038%2Fnrg3117&amp;volume=13&amp;issue=1&amp;pages=36-46&amp;publication_year=2011&amp;author=Treangen%2CTJ&amp;author=Salzberg%2CSL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR32\">Logsdon GA, Vollger MR, Eichler EE. Long-read human genome sequencing and its applications. Nat Rev Genet. 2020;21(10):597\u2013614.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41576-020-0236-x\" data-track-item_id=\"10.1038\/s41576-020-0236-x\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41576-020-0236-x\" aria-label=\"Article reference 32\" data-doi=\"10.1038\/s41576-020-0236-x\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3cXhtFSgs77F\" aria-label=\"CAS reference 32\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=32504078\" aria-label=\"PubMed reference 32\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7877196\" aria-label=\"PubMed Central reference 32\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 32\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Long-read%20human%20genome%20sequencing%20and%20its%20applications&amp;journal=Nat%20Rev%20Genet&amp;doi=10.1038%2Fs41576-020-0236-x&amp;volume=21&amp;issue=10&amp;pages=597-614&amp;publication_year=2020&amp;author=Logsdon%2CGA&amp;author=Vollger%2CMR&amp;author=Eichler%2CEE\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR33\">Lang D, Zhang S, Ren P, Liang F, Sun Z, Meng G, et al. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore. Gigascience. 2020;9(12):giaa123.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/gigascience\/giaa123\" data-track-item_id=\"10.1093\/gigascience\/giaa123\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fgigascience%2Fgiaa123\" aria-label=\"Article reference 33\" data-doi=\"10.1093\/gigascience\/giaa123\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=33319909\" aria-label=\"PubMed reference 33\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7736813\" aria-label=\"PubMed Central reference 33\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 33\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Comparison%20of%20the%20two%20up-to-date%20sequencing%20technologies%20for%20genome%20assembly%3A%20HiFi%20reads%20of%20Pacific%20Biosciences%20Sequel%20II%20system%20and%20ultralong%20reads%20of%20Oxford%20Nanopore&amp;journal=Gigascience&amp;doi=10.1093%2Fgigascience%2Fgiaa123&amp;volume=9&amp;issue=12&amp;publication_year=2020&amp;author=Lang%2CD&amp;author=Zhang%2CS&amp;author=Ren%2CP&amp;author=Liang%2CF&amp;author=Sun%2CZ&amp;author=Meng%2CG&amp;author=Tan%2CY&amp;author=Li%2CX&amp;author=Lai%2CQ&amp;author=Han%2CL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR34\">Simon M, Hancock JM. Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins. Genome Biol. 2009;10(6):R59.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1186\/gb-2009-10-6-r59\" data-track-item_id=\"10.1186\/gb-2009-10-6-r59\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1186\/gb-2009-10-6-r59\" aria-label=\"Article reference 34\" data-doi=\"10.1186\/gb-2009-10-6-r59\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=19486509\" aria-label=\"PubMed reference 34\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC2718493\" aria-label=\"PubMed Central reference 34\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 34\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Tandem%20and%20cryptic%20amino%20acid%20repeats%20accumulate%20in%20disordered%20regions%20of%20proteins&amp;journal=Genome%20Biol&amp;doi=10.1186%2Fgb-2009-10-6-r59&amp;volume=10&amp;issue=6&amp;publication_year=2009&amp;author=Simon%2CM&amp;author=Hancock%2CJM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR35\">Gemayel R, Vinces MD, Legendre M, Verstrepen KJ. Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet. 2010;44(1):445\u201377.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1146\/annurev-genet-072610-155046\" data-track-item_id=\"10.1146\/annurev-genet-072610-155046\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1146%2Fannurev-genet-072610-155046\" aria-label=\"Article reference 35\" data-doi=\"10.1146\/annurev-genet-072610-155046\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3cXhs1SmurbP\" aria-label=\"CAS reference 35\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=20809801\" aria-label=\"PubMed reference 35\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 35\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Variable%20tandem%20repeats%20accelerate%20evolution%20of%20coding%20and%20regulatory%20sequences&amp;journal=Annu%20Rev%20Genet&amp;doi=10.1146%2Fannurev-genet-072610-155046&amp;volume=44&amp;issue=1&amp;pages=445-77&amp;publication_year=2010&amp;author=Gemayel%2CR&amp;author=Vinces%2CMD&amp;author=Legendre%2CM&amp;author=Verstrepen%2CKJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR36\">Li M, Sun C, Xu N, Bian P, Tian X, Wang X, et al. De novo assembly of 20 chicken genomes reveals the undetectable phenomenon for thousands of core genes on microchromosomes and subtelomeric regions. Mol Biol Evol. 2022;39(4):msac066.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/molbev\/msac066\" data-track-item_id=\"10.1093\/molbev\/msac066\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fmolbev%2Fmsac066\" aria-label=\"Article reference 36\" data-doi=\"10.1093\/molbev\/msac066\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38XisFKltr7N\" aria-label=\"CAS reference 36\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35325213\" aria-label=\"PubMed reference 36\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9021737\" aria-label=\"PubMed Central reference 36\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 36\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=De%20novo%20assembly%20of%2020%20chicken%20genomes%20reveals%20the%20undetectable%20phenomenon%20for%20thousands%20of%20core%20genes%20on%20microchromosomes%20and%20subtelomeric%20regions&amp;journal=Mol%20Biol%20Evol&amp;doi=10.1093%2Fmolbev%2Fmsac066&amp;volume=39&amp;issue=4&amp;publication_year=2022&amp;author=Li%2CM&amp;author=Sun%2CC&amp;author=Xu%2CN&amp;author=Bian%2CP&amp;author=Tian%2CX&amp;author=Wang%2CX&amp;author=Wang%2CY&amp;author=Jia%2CX&amp;author=Heller%2CR&amp;author=Wang%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR37\">Coggins LW, O\u2019Prey M. DNA tertiary structures formed in vitro by misaligned hybridization of multiple tandem repeat sequences. Nucleic Acids Res. 1989;17(18):7417\u201326.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/nar\/17.18.7417\" data-track-item_id=\"10.1093\/nar\/17.18.7417\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fnar%2F17.18.7417\" aria-label=\"Article reference 37\" data-doi=\"10.1093\/nar\/17.18.7417\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DyaL1MXmtFSltLY%3D\" aria-label=\"CAS reference 37\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=2677997\" aria-label=\"PubMed reference 37\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC334820\" aria-label=\"PubMed Central reference 37\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 37\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=DNA%20tertiary%20structures%20formed%20in%20vitro%20by%20misaligned%20hybridization%20of%20multiple%20tandem%20repeat%20sequences&amp;journal=Nucleic%20Acids%20Res&amp;doi=10.1093%2Fnar%2F17.18.7417&amp;volume=17&amp;issue=18&amp;pages=7417-26&amp;publication_year=1989&amp;author=Coggins%2CLW&amp;author=O%E2%80%99Prey%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR38\">Fan H, Chu JY. A brief review of short tandem repeat mutation. Genomics Proteomics Bioinf. 2007;5(1):7\u201314.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/S1672-0229(07)60009-6\" data-track-item_id=\"10.1016\/S1672-0229(07)60009-6\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2FS1672-0229%2807%2960009-6\" aria-label=\"Article reference 38\" data-doi=\"10.1016\/S1672-0229(07)60009-6\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2sXpsVKltrs%3D\" aria-label=\"CAS reference 38\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 38\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=A%20brief%20review%20of%20short%20tandem%20repeat%20mutation&amp;journal=Genomics%20Proteomics%20Bioinf&amp;doi=10.1016%2FS1672-0229%2807%2960009-6&amp;volume=5&amp;issue=1&amp;pages=7-14&amp;publication_year=2007&amp;author=Fan%2CH&amp;author=Chu%2CJY\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR39\">Ahmed M, Liang P. Transposable elements are a significant contributor to tandem repeats in the human genome. Int J Genomics. 2012;2012(1):947089.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 39\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Transposable%20elements%20are%20a%20significant%20contributor%20to%20tandem%20repeats%20in%20the%20human%20genome&amp;journal=Int%20J%20Genomics&amp;volume=2012&amp;issue=1&amp;publication_year=2012&amp;author=Ahmed%2CM&amp;author=Liang%2CP\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR40\">Marteijn JA, Lans H, Vermeulen W, Hoeijmakers JH. Understanding nucleotide excision repair and its roles in cancer and ageing. Nat Rev Mol Cell Biol. 2014;15(7):465\u201381.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/nrm3822\" data-track-item_id=\"10.1038\/nrm3822\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fnrm3822\" aria-label=\"Article reference 40\" data-doi=\"10.1038\/nrm3822\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2cXhtVaisL7I\" aria-label=\"CAS reference 40\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=24954209\" aria-label=\"PubMed reference 40\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 40\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Understanding%20nucleotide%20excision%20repair%20and%20its%20roles%20in%20cancer%20and%20ageing&amp;journal=Nat%20Rev%20Mol%20Cell%20Biol&amp;doi=10.1038%2Fnrm3822&amp;volume=15&amp;issue=7&amp;pages=465-81&amp;publication_year=2014&amp;author=Marteijn%2CJA&amp;author=Lans%2CH&amp;author=Vermeulen%2CW&amp;author=Hoeijmakers%2CJH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR41\">Selby CP, Lindsey-Boltz LA, Li W, Sancar A. Molecular mechanisms of Transcription-Coupled repair. Annu Rev Biochem. 2023;92:115\u201344.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1146\/annurev-biochem-041522-034232\" data-track-item_id=\"10.1146\/annurev-biochem-041522-034232\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1146%2Fannurev-biochem-041522-034232\" aria-label=\"Article reference 41\" data-doi=\"10.1146\/annurev-biochem-041522-034232\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXmvFaktrs%3D\" aria-label=\"CAS reference 41\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=37001137\" aria-label=\"PubMed reference 41\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 41\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Molecular%20mechanisms%20of%20Transcription-Coupled%20repair&amp;journal=Annu%20Rev%20Biochem&amp;doi=10.1146%2Fannurev-biochem-041522-034232&amp;volume=92&amp;pages=115-44&amp;publication_year=2023&amp;author=Selby%2CCP&amp;author=Lindsey-Boltz%2CLA&amp;author=Li%2CW&amp;author=Sancar%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR42\">Rodriguez F, Arkhipova IR. Transposable elements and polyploid evolution in animals. Curr Opin Genet Dev. 2018;49:115\u201323.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.gde.2018.04.003\" data-track-item_id=\"10.1016\/j.gde.2018.04.003\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.gde.2018.04.003\" aria-label=\"Article reference 42\" data-doi=\"10.1016\/j.gde.2018.04.003\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1cXotFKlsLk%3D\" aria-label=\"CAS reference 42\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29715568\" aria-label=\"PubMed reference 42\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5975190\" aria-label=\"PubMed Central reference 42\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 42\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Transposable%20elements%20and%20polyploid%20evolution%20in%20animals&amp;journal=Curr%20Opin%20Genet%20Dev&amp;doi=10.1016%2Fj.gde.2018.04.003&amp;volume=49&amp;pages=115-23&amp;publication_year=2018&amp;author=Rodriguez%2CF&amp;author=Arkhipova%2CIR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR43\">Marburger S, Alexandrou MA, Taggart JB, Creer S, Carvalho G, Oliveira C, et al. Whole genome duplication and transposable element proliferation drive genome expansion in corydoradinae catfishes. Proc Biol Sci. 2018;285(1872):20172732.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29445022\" aria-label=\"PubMed reference 43\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5829208\" aria-label=\"PubMed Central reference 43\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 43\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Whole%20genome%20duplication%20and%20transposable%20element%20proliferation%20drive%20genome%20expansion%20in%20corydoradinae%20catfishes&amp;journal=Proc%20Biol%20Sci&amp;volume=285&amp;issue=1872&amp;publication_year=2018&amp;author=Marburger%2CS&amp;author=Alexandrou%2CMA&amp;author=Taggart%2CJB&amp;author=Creer%2CS&amp;author=Carvalho%2CG&amp;author=Oliveira%2CC&amp;author=Taylor%2CMI\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR44\">Campbell MA, Buser TJ, Alfaro ME, L\u00f3pez JA. Addressing incomplete lineage sorting and paralogy in the inference of uncertain salmonid phylogenetic relationships. PeerJ. 2020;8:e9389.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.7717\/peerj.9389\" data-track-item_id=\"10.7717\/peerj.9389\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.7717%2Fpeerj.9389\" aria-label=\"Article reference 44\" data-doi=\"10.7717\/peerj.9389\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=32685284\" aria-label=\"PubMed reference 44\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7337038\" aria-label=\"PubMed Central reference 44\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 44\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Addressing%20incomplete%20lineage%20sorting%20and%20paralogy%20in%20the%20inference%20of%20uncertain%20salmonid%20phylogenetic%20relationships&amp;journal=PeerJ&amp;doi=10.7717%2Fpeerj.9389&amp;volume=8&amp;publication_year=2020&amp;author=Campbell%2CMA&amp;author=Buser%2CTJ&amp;author=Alfaro%2CME&amp;author=L%C3%B3pez%2CJA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR45\">Cr\u00eate-Lafreni\u00e8re A, Weir LK, Bernatchez L. Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling. PLoS One. 2012;7(10):e46662.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1371\/journal.pone.0046662\" data-track-item_id=\"10.1371\/journal.pone.0046662\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1371%2Fjournal.pone.0046662\" aria-label=\"Article reference 45\" data-doi=\"10.1371\/journal.pone.0046662\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23071608\" aria-label=\"PubMed reference 45\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3465342\" aria-label=\"PubMed Central reference 45\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 45\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Framing%20the%20Salmonidae%20family%20phylogenetic%20portrait%3A%20a%20more%20complete%20picture%20from%20increased%20taxon%20sampling&amp;journal=PLoS%20One&amp;doi=10.1371%2Fjournal.pone.0046662&amp;volume=7&amp;issue=10&amp;publication_year=2012&amp;author=Cr%C3%AAte-Lafreni%C3%A8re%2CA&amp;author=Weir%2CLK&amp;author=Bernatchez%2CL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR46\">McKay SJ, Trautner J, Smith MJ, Koop BF, Devlin RH. Evolution of duplicated growth hormone genes in autotetraploid salmonid fishes. Genome. 2004;47(4):714\u201323.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1139\/g04-018\" data-track-item_id=\"10.1139\/g04-018\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1139%2Fg04-018\" aria-label=\"Article reference 46\" data-doi=\"10.1139\/g04-018\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2cXotlyks7k%3D\" aria-label=\"CAS reference 46\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=15284876\" aria-label=\"PubMed reference 46\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 46\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Evolution%20of%20duplicated%20growth%20hormone%20genes%20in%20autotetraploid%20salmonid%20fishes&amp;journal=Genome&amp;doi=10.1139%2Fg04-018&amp;volume=47&amp;issue=4&amp;pages=714-23&amp;publication_year=2004&amp;author=McKay%2CSJ&amp;author=Trautner%2CJ&amp;author=Smith%2CMJ&amp;author=Koop%2CBF&amp;author=Devlin%2CRH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR47\">Wang Y, Guo R, Li H, Zhang X, Du J, Song Z. The complete mitochondrial genome of the Sichuan Taimen (Hucho bleekeri): repetitive sequences in the control region and phylogenetic implications for Salmonidae. Mar Genomics. 2011;4(3):221\u20138.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.margen.2011.06.003\" data-track-item_id=\"10.1016\/j.margen.2011.06.003\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.margen.2011.06.003\" aria-label=\"Article reference 47\" data-doi=\"10.1016\/j.margen.2011.06.003\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=21867975\" aria-label=\"PubMed reference 47\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 47\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20complete%20mitochondrial%20genome%20of%20the%20Sichuan%20Taimen%20%28Hucho%20bleekeri%29%3A%20repetitive%20sequences%20in%20the%20control%20region%20and%20phylogenetic%20implications%20for%20Salmonidae&amp;journal=Mar%20Genomics&amp;doi=10.1016%2Fj.margen.2011.06.003&amp;volume=4&amp;issue=3&amp;pages=221-8&amp;publication_year=2011&amp;author=Wang%2CY&amp;author=Guo%2CR&amp;author=Li%2CH&amp;author=Zhang%2CX&amp;author=Du%2CJ&amp;author=Song%2CZ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR48\">Wang Y, Xiong F, Song Z. Molecular phylogeny and adaptive mitochondrial DNA evolution of salmonids (Pisces: Salmonidae). Front Genet. 2022;13:903240.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.3389\/fgene.2022.903240\" data-track-item_id=\"10.3389\/fgene.2022.903240\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.3389%2Ffgene.2022.903240\" aria-label=\"Article reference 48\" data-doi=\"10.3389\/fgene.2022.903240\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38XhslOmtLvI\" aria-label=\"CAS reference 48\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35783273\" aria-label=\"PubMed reference 48\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9249015\" aria-label=\"PubMed Central reference 48\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 48\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Molecular%20phylogeny%20and%20adaptive%20mitochondrial%20DNA%20evolution%20of%20salmonids%20%28Pisces%3A%20Salmonidae%29&amp;journal=Front%20Genet&amp;doi=10.3389%2Ffgene.2022.903240&amp;volume=13&amp;publication_year=2022&amp;author=Wang%2CY&amp;author=Xiong%2CF&amp;author=Song%2CZ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR49\">Macqueen DJ, Johnston IA. A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification. Proc Biol Sci. 2014;281(1778):20132881.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=24452024\" aria-label=\"PubMed reference 49\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3906940\" aria-label=\"PubMed Central reference 49\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 49\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=A%20well-constrained%20estimate%20for%20the%20timing%20of%20the%20salmonid%20whole%20genome%20duplication%20reveals%20major%20decoupling%20from%20species%20diversification&amp;journal=Proc%20Biol%20Sci&amp;volume=281&amp;issue=1778&amp;publication_year=2014&amp;author=Macqueen%2CDJ&amp;author=Johnston%2CIA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR50\">Campbell MA, L\u00f3pez JA, Sado T, Miya M. Pike and salmon as sister taxa: detailed intraclade resolution and divergence time estimation of Esociformes\u2009+\u2009Salmoniformes based on whole mitochondrial genome sequences. Gene. 2013;530(1):57\u201365.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.gene.2013.07.068\" data-track-item_id=\"10.1016\/j.gene.2013.07.068\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.gene.2013.07.068\" aria-label=\"Article reference 50\" data-doi=\"10.1016\/j.gene.2013.07.068\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3sXhtlGltrjF\" aria-label=\"CAS reference 50\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23954876\" aria-label=\"PubMed reference 50\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 50\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Pike%20and%20salmon%20as%20sister%20taxa%3A%20detailed%20intraclade%20resolution%20and%20divergence%20time%20estimation%20of%20Esociformes%E2%80%89%2B%E2%80%89Salmoniformes%20based%20on%20whole%20mitochondrial%20genome%20sequences&amp;journal=Gene&amp;doi=10.1016%2Fj.gene.2013.07.068&amp;volume=530&amp;issue=1&amp;pages=57-65&amp;publication_year=2013&amp;author=Campbell%2CMA&amp;author=L%C3%B3pez%2CJA&amp;author=Sado%2CT&amp;author=Miya%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR51\">Shedko SV, Miroshnichenko IL, Nemkova GA. Phylogeny of salmonids (Salmoniformes, Salmonidae) and molecular dating: analysis of mtDNA data. Genetika. 2013;49(6):718\u201334.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:STN:280:DC%2BC2czosFWkuw%3D%3D\" aria-label=\"CAS reference 51\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=24450195\" aria-label=\"PubMed reference 51\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 51\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Phylogeny%20of%20salmonids%20%28Salmoniformes%2C%20Salmonidae%29%20and%20molecular%20dating%3A%20analysis%20of%20mtDNA%20data&amp;journal=Genetika&amp;volume=49&amp;issue=6&amp;pages=718-34&amp;publication_year=2013&amp;author=Shedko%2CSV&amp;author=Miroshnichenko%2CIL&amp;author=Nemkova%2CGA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR52\">Crespi BJ, Fulton MJ. Molecular systematics of salmonidae: combined nuclear data yields a robust phylogeny. Mol Phylogenet Evol. 2004;31(2):658\u201379.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.ympev.2003.08.012\" data-track-item_id=\"10.1016\/j.ympev.2003.08.012\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.ympev.2003.08.012\" aria-label=\"Article reference 52\" data-doi=\"10.1016\/j.ympev.2003.08.012\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2cXivVKntbg%3D\" aria-label=\"CAS reference 52\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=15062801\" aria-label=\"PubMed reference 52\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 52\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Molecular%20systematics%20of%20salmonidae%3A%20combined%20nuclear%20data%20yields%20a%20robust%20phylogeny&amp;journal=Mol%20Phylogenet%20Evol&amp;doi=10.1016%2Fj.ympev.2003.08.012&amp;volume=31&amp;issue=2&amp;pages=658-79&amp;publication_year=2004&amp;author=Crespi%2CBJ&amp;author=Fulton%2CMJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR53\">B\u00f6hme MJP, Palaeoclimatology. Palaeoecology: the miocene Climatic optimum: evidence from ectothermic vertebrates of central Europe. Palaeogeogr Palaeoclimatol Palaeoecol. 2003;195(3\u20134):389\u2013401.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/S0031-0182(03)00367-5\" data-track-item_id=\"10.1016\/S0031-0182(03)00367-5\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2FS0031-0182%2803%2900367-5\" aria-label=\"Article reference 53\" data-doi=\"10.1016\/S0031-0182(03)00367-5\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 53\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Palaeoecology%3A%20the%20miocene%20Climatic%20optimum%3A%20evidence%20from%20ectothermic%20vertebrates%20of%20central%20Europe&amp;journal=Palaeogeogr%20Palaeoclimatol%20Palaeoecol&amp;doi=10.1016%2FS0031-0182%2803%2900367-5&amp;volume=195&amp;issue=3%E2%80%934&amp;pages=389-401&amp;publication_year=2003&amp;author=B%C3%B6hme%2CMJP&amp;author=Palaeoclimatology%2C\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR54\">Sun J, Zhang Z. Palynological evidence for the mid-Miocene climatic optimum recorded in cenozoic sediments of the Tian Shan range, Northwestern China. Glob Planet Change. 2008;64(1):53\u201368.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.gloplacha.2008.09.001\" data-track-item_id=\"10.1016\/j.gloplacha.2008.09.001\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.gloplacha.2008.09.001\" aria-label=\"Article reference 54\" data-doi=\"10.1016\/j.gloplacha.2008.09.001\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 54\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Palynological%20evidence%20for%20the%20mid-Miocene%20climatic%20optimum%20recorded%20in%20cenozoic%20sediments%20of%20the%20Tian%20Shan%20range%2C%20Northwestern%20China&amp;journal=Glob%20Planet%20Change&amp;doi=10.1016%2Fj.gloplacha.2008.09.001&amp;volume=64&amp;issue=1&amp;pages=53-68&amp;publication_year=2008&amp;author=Sun%2CJ&amp;author=Zhang%2CZ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR55\">Shen Z, Tang W, Li K. The analysis of population dynamics of Hucho bleekeri in Markehe river, Qinghai Province. Reserv Fisheries. 2006;26:71\u20133.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2sXhsVOiurg%3D\" aria-label=\"CAS reference 55\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 55\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20analysis%20of%20population%20dynamics%20of%20Hucho%20bleekeri%20in%20Markehe%20river%2C%20Qinghai%20Province&amp;journal=Reserv%20Fisheries&amp;volume=26&amp;pages=71-3&amp;publication_year=2006&amp;author=Shen%2CZ&amp;author=Tang%2CW&amp;author=Li%2CK\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR56\">Stefanova P, Taseva M, Georgieva T, Gotcheva V, Angelov A. A modified CTAB method for DNA extraction from soybean and meat products. Biotechnol Biotechnol Equip. 2013;27(3):3803\u201310.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.5504\/BBEQ.2013.0026\" data-track-item_id=\"10.5504\/BBEQ.2013.0026\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.5504%2FBBEQ.2013.0026\" aria-label=\"Article reference 56\" data-doi=\"10.5504\/BBEQ.2013.0026\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3sXht1ClurrE\" aria-label=\"CAS reference 56\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 56\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=A%20modified%20CTAB%20method%20for%20DNA%20extraction%20from%20soybean%20and%20meat%20products&amp;journal=Biotechnol%20Biotechnol%20Equip&amp;doi=10.5504%2FBBEQ.2013.0026&amp;volume=27&amp;issue=3&amp;pages=3803-10&amp;publication_year=2013&amp;author=Stefanova%2CP&amp;author=Taseva%2CM&amp;author=Georgieva%2CT&amp;author=Gotcheva%2CV&amp;author=Angelov%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR57\">Ardui S, Ameur A, Vermeesch JR, Hestand MS. Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics. Nucleic Acids Res. 2018;46(5):2159\u201368.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/nar\/gky066\" data-track-item_id=\"10.1093\/nar\/gky066\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fnar%2Fgky066\" aria-label=\"Article reference 57\" data-doi=\"10.1093\/nar\/gky066\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1cXitlGjtb%2FN\" aria-label=\"CAS reference 57\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29401301\" aria-label=\"PubMed reference 57\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5861413\" aria-label=\"PubMed Central reference 57\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 57\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Single%20molecule%20real-time%20%28SMRT%29%20sequencing%20comes%20of%20age%3A%20applications%20and%20utilities%20for%20medical%20diagnostics&amp;journal=Nucleic%20Acids%20Res&amp;doi=10.1093%2Fnar%2Fgky066&amp;volume=46&amp;issue=5&amp;pages=2159-68&amp;publication_year=2018&amp;author=Ardui%2CS&amp;author=Ameur%2CA&amp;author=Vermeesch%2CJR&amp;author=Hestand%2CMS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR58\">Chen S, Zhou Y, Chen Y, Gu J. Fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018;34(17):i884-90.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/bioinformatics\/bty560\" data-track-item_id=\"10.1093\/bioinformatics\/bty560\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fbioinformatics%2Fbty560\" aria-label=\"Article reference 58\" data-doi=\"10.1093\/bioinformatics\/bty560\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=30423086\" aria-label=\"PubMed reference 58\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6129281\" aria-label=\"PubMed Central reference 58\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 58\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Fastp%3A%20an%20ultra-fast%20all-in-one%20FASTQ%20preprocessor&amp;journal=Bioinformatics&amp;doi=10.1093%2Fbioinformatics%2Fbty560&amp;volume=34&amp;issue=17&amp;pages=i884-90&amp;publication_year=2018&amp;author=Chen%2CS&amp;author=Zhou%2CY&amp;author=Chen%2CY&amp;author=Gu%2CJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR59\">Liu B, Shi Y, Yuan J, Hu X, Zhang H, Li N, Li Z, Chen Y, Mu D, Fan W. Estimation of genomic characteristics by analyzing k-mer frequency in de Novo genome projects. arXiv. 2013;arXiv:13082012.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR60\">Ranallo-Benavidez TR, Jaron KS, Schatz MC. GenomeScope 2.0 and smudgeplot for reference-free profiling of polyploid genomes. Nat Commun. 2020;11(1):1432.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41467-020-14998-3\" data-track-item_id=\"10.1038\/s41467-020-14998-3\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41467-020-14998-3\" aria-label=\"Article reference 60\" data-doi=\"10.1038\/s41467-020-14998-3\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3cXlt1Wisb0%3D\" aria-label=\"CAS reference 60\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=32188846\" aria-label=\"PubMed reference 60\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7080791\" aria-label=\"PubMed Central reference 60\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 60\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=GenomeScope%202.0%20and%20smudgeplot%20for%20reference-free%20profiling%20of%20polyploid%20genomes&amp;journal=Nat%20Commun&amp;doi=10.1038%2Fs41467-020-14998-3&amp;volume=11&amp;issue=1&amp;publication_year=2020&amp;author=Ranallo-Benavidez%2CTR&amp;author=Jaron%2CKS&amp;author=Schatz%2CMC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR61\">Cheng H, Concepcion GT, Feng X, Zhang H, Li H. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm. Nat Methods. 2021;18(2):170\u20135.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41592-020-01056-5\" data-track-item_id=\"10.1038\/s41592-020-01056-5\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41592-020-01056-5\" aria-label=\"Article reference 61\" data-doi=\"10.1038\/s41592-020-01056-5\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXis1OntL0%3D\" aria-label=\"CAS reference 61\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=33526886\" aria-label=\"PubMed reference 61\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7961889\" aria-label=\"PubMed Central reference 61\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 61\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Haplotype-resolved%20de%20novo%20assembly%20using%20phased%20assembly%20graphs%20with%20hifiasm&amp;journal=Nat%20Methods&amp;doi=10.1038%2Fs41592-020-01056-5&amp;volume=18&amp;issue=2&amp;pages=170-5&amp;publication_year=2021&amp;author=Cheng%2CH&amp;author=Concepcion%2CGT&amp;author=Feng%2CX&amp;author=Zhang%2CH&amp;author=Li%2CH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR62\">Durand NC, Shamim MS, Machol I, Rao SS, Huntley MH, Lander ES, et al. Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments. Cell Syst. 2016;3(1):95\u20138.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.cels.2016.07.002\" data-track-item_id=\"10.1016\/j.cels.2016.07.002\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.cels.2016.07.002\" aria-label=\"Article reference 62\" data-doi=\"10.1016\/j.cels.2016.07.002\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2sXhtFKksbk%3D\" aria-label=\"CAS reference 62\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=27467249\" aria-label=\"PubMed reference 62\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5846465\" aria-label=\"PubMed Central reference 62\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 62\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Juicer%20provides%20a%20one-click%20system%20for%20analyzing%20loop-resolution%20Hi-C%20experiments&amp;journal=Cell%20Syst&amp;doi=10.1016%2Fj.cels.2016.07.002&amp;volume=3&amp;issue=1&amp;pages=95-8&amp;publication_year=2016&amp;author=Durand%2CNC&amp;author=Shamim%2CMS&amp;author=Machol%2CI&amp;author=Rao%2CSS&amp;author=Huntley%2CMH&amp;author=Lander%2CES&amp;author=Aiden%2CEL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR63\">Dudchenko O, Batra SS, Omer AD, Nyquist SK, Hoeger M, Durand NC, et al. De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science. 2017;356(6333):92\u20135.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1126\/science.aal3327\" data-track-item_id=\"10.1126\/science.aal3327\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1126%2Fscience.aal3327\" aria-label=\"Article reference 63\" data-doi=\"10.1126\/science.aal3327\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2sXlsVymsbo%3D\" aria-label=\"CAS reference 63\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=28336562\" aria-label=\"PubMed reference 63\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5635820\" aria-label=\"PubMed Central reference 63\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 63\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=De%20novo%20assembly%20of%20the%20Aedes%20aegypti%20genome%20using%20Hi-C%20yields%20chromosome-length%20scaffolds&amp;journal=Science&amp;doi=10.1126%2Fscience.aal3327&amp;volume=356&amp;issue=6333&amp;pages=92-5&amp;publication_year=2017&amp;author=Dudchenko%2CO&amp;author=Batra%2CSS&amp;author=Omer%2CAD&amp;author=Nyquist%2CSK&amp;author=Hoeger%2CM&amp;author=Durand%2CNC&amp;author=Shamim%2CMS&amp;author=Machol%2CI&amp;author=Lander%2CES&amp;author=Aiden%2CAP\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR64\">Durand NC, Robinson JT, Shamim MS, Machol I, Mesirov JP, Lander ES, Aiden EL. Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom. Cell Syst. 2016;3(1):99\u2013101.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1016\/j.cels.2015.07.012\" data-track-item_id=\"10.1016\/j.cels.2015.07.012\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1016%2Fj.cels.2015.07.012\" aria-label=\"Article reference 64\" data-doi=\"10.1016\/j.cels.2015.07.012\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2sXhtFKks7w%3D\" aria-label=\"CAS reference 64\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=27467250\" aria-label=\"PubMed reference 64\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5596920\" aria-label=\"PubMed Central reference 64\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 64\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Juicebox%20provides%20a%20visualization%20system%20for%20Hi-C%20contact%20maps%20with%20unlimited%20zoom&amp;journal=Cell%20Syst&amp;doi=10.1016%2Fj.cels.2015.07.012&amp;volume=3&amp;issue=1&amp;pages=99-101&amp;publication_year=2016&amp;author=Durand%2CNC&amp;author=Robinson%2CJT&amp;author=Shamim%2CMS&amp;author=Machol%2CI&amp;author=Mesirov%2CJP&amp;author=Lander%2CES&amp;author=Aiden%2CEL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR65\">Roach MJ, Schmidt SA, Borneman AR. Purge haplotigs: allelic contig reassignment for third-gen diploid genome assemblies. BMC Bioinf. 2018;19(1):460.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1186\/s12859-018-2485-7\" data-track-item_id=\"10.1186\/s12859-018-2485-7\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1186\/s12859-018-2485-7\" aria-label=\"Article reference 65\" data-doi=\"10.1186\/s12859-018-2485-7\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXht1SksrfM\" aria-label=\"CAS reference 65\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 65\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Purge%20haplotigs%3A%20allelic%20contig%20reassignment%20for%20third-gen%20diploid%20genome%20assemblies&amp;journal=BMC%20Bioinf&amp;doi=10.1186%2Fs12859-018-2485-7&amp;volume=19&amp;issue=1&amp;publication_year=2018&amp;author=Roach%2CMJ&amp;author=Schmidt%2CSA&amp;author=Borneman%2CAR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR66\">Xu M, Guo L, Gu S, Wang O, Zhang R, Peters BA, et al. TGS-gapcloser: a fast and accurate gap closer for large genomes with low coverage of error-prone long reads. Gigascience. 2020;9(9):giaa094.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/gigascience\/giaa094\" data-track-item_id=\"10.1093\/gigascience\/giaa094\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fgigascience%2Fgiaa094\" aria-label=\"Article reference 66\" data-doi=\"10.1093\/gigascience\/giaa094\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=32893860\" aria-label=\"PubMed reference 66\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7476103\" aria-label=\"PubMed Central reference 66\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 66\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=TGS-gapcloser%3A%20a%20fast%20and%20accurate%20gap%20closer%20for%20large%20genomes%20with%20low%20coverage%20of%20error-prone%20long%20reads&amp;journal=Gigascience&amp;doi=10.1093%2Fgigascience%2Fgiaa094&amp;volume=9&amp;issue=9&amp;publication_year=2020&amp;author=Xu%2CM&amp;author=Guo%2CL&amp;author=Gu%2CS&amp;author=Wang%2CO&amp;author=Zhang%2CR&amp;author=Peters%2CBA&amp;author=Fan%2CG&amp;author=Liu%2CX&amp;author=Xu%2CX&amp;author=Deng%2CL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR67\">Sim\u00e3o FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics. 2015;31(19):3210\u20132.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/bioinformatics\/btv351\" data-track-item_id=\"10.1093\/bioinformatics\/btv351\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fbioinformatics%2Fbtv351\" aria-label=\"Article reference 67\" data-doi=\"10.1093\/bioinformatics\/btv351\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=26059717\" aria-label=\"PubMed reference 67\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 67\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=BUSCO%3A%20assessing%20genome%20assembly%20and%20annotation%20completeness%20with%20single-copy%20orthologs&amp;journal=Bioinformatics&amp;doi=10.1093%2Fbioinformatics%2Fbtv351&amp;volume=31&amp;issue=19&amp;pages=3210-2&amp;publication_year=2015&amp;author=Sim%C3%A3o%2CFA&amp;author=Waterhouse%2CRM&amp;author=Ioannidis%2CP&amp;author=Kriventseva%2CEV&amp;author=Zdobnov%2CEM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR68\">Flynn JM, Hubley R, Goubert C, Rosen J, Clark AG, Feschotte C, et al. Repeatmodeler2 for automated genomic discovery of transposable element families. Proc Natl Acad Sci U S A. 2020;117(17):9451\u20137.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1073\/pnas.1921046117\" data-track-item_id=\"10.1073\/pnas.1921046117\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1073%2Fpnas.1921046117\" aria-label=\"Article reference 68\" data-doi=\"10.1073\/pnas.1921046117\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3cXnvFeqt74%3D\" aria-label=\"CAS reference 68\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=32300014\" aria-label=\"PubMed reference 68\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7196820\" aria-label=\"PubMed Central reference 68\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 68\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Repeatmodeler2%20for%20automated%20genomic%20discovery%20of%20transposable%20element%20families&amp;journal=Proc%20Natl%20Acad%20Sci%20U%20S%20A&amp;doi=10.1073%2Fpnas.1921046117&amp;volume=117&amp;issue=17&amp;pages=9451-7&amp;publication_year=2020&amp;author=Flynn%2CJM&amp;author=Hubley%2CR&amp;author=Goubert%2CC&amp;author=Rosen%2CJ&amp;author=Clark%2CAG&amp;author=Feschotte%2CC&amp;author=Smit%2CAF\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR69\">Xu Z, Wang H. Ltr_finder: an efficient tool for the prediction of full-length LTR retrotransposons. Nucleic Acids Res. 2007;35(2):W265-8.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/nar\/gkm286\" data-track-item_id=\"10.1093\/nar\/gkm286\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fnar%2Fgkm286\" aria-label=\"Article reference 69\" data-doi=\"10.1093\/nar\/gkm286\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=17485477\" aria-label=\"PubMed reference 69\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC1933203\" aria-label=\"PubMed Central reference 69\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 69\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Ltr_finder%3A%20an%20efficient%20tool%20for%20the%20prediction%20of%20full-length%20LTR%20retrotransposons&amp;journal=Nucleic%20Acids%20Res&amp;doi=10.1093%2Fnar%2Fgkm286&amp;volume=35&amp;issue=2&amp;pages=W265-8&amp;publication_year=2007&amp;author=Xu%2CZ&amp;author=Wang%2CH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR70\">Ou S, Jiang N. Ltr_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons. Plant Physiol. 2018;176(2):1410\u201322.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1104\/pp.17.01310\" data-track-item_id=\"10.1104\/pp.17.01310\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1104%2Fpp.17.01310\" aria-label=\"Article reference 70\" data-doi=\"10.1104\/pp.17.01310\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1cXhs1CjtbzO\" aria-label=\"CAS reference 70\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29233850\" aria-label=\"PubMed reference 70\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 70\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Ltr_retriever%3A%20a%20highly%20accurate%20and%20sensitive%20program%20for%20identification%20of%20long%20terminal%20repeat%20retrotransposons&amp;journal=Plant%20Physiol&amp;doi=10.1104%2Fpp.17.01310&amp;volume=176&amp;issue=2&amp;pages=1410-22&amp;publication_year=2018&amp;author=Ou%2CS&amp;author=Jiang%2CN\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR71\">Ye J, McGinnis S, Madden TL. BLAST: improvements for better sequence analysis. Nucleic Acids Res. 2006;34(Web Server issue):W6-9.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/nar\/gkl164\" data-track-item_id=\"10.1093\/nar\/gkl164\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fnar%2Fgkl164\" aria-label=\"Article reference 71\" data-doi=\"10.1093\/nar\/gkl164\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD28Xps1yitLc%3D\" aria-label=\"CAS reference 71\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=16845079\" aria-label=\"PubMed reference 71\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC1538791\" aria-label=\"PubMed Central reference 71\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 71\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=BLAST%3A%20improvements%20for%20better%20sequence%20analysis&amp;journal=Nucleic%20Acids%20Res&amp;doi=10.1093%2Fnar%2Fgkl164&amp;volume=34&amp;issue=Web%20Server%20issue&amp;pages=W6-9&amp;publication_year=2006&amp;author=Ye%2CJ&amp;author=McGinnis%2CS&amp;author=Madden%2CTL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR72\">Tarailo-Graovac M, Chen N. Using repeatmasker to identify repetitive elements in genomic sequences. Curr Protoc. 2009;4:1\u20134.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 72\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Using%20repeatmasker%20to%20identify%20repetitive%20elements%20in%20genomic%20sequences&amp;journal=Curr%20Protoc&amp;volume=4&amp;pages=1-4&amp;publication_year=2009&amp;author=Tarailo-Graovac%2CM&amp;author=Chen%2CN\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR73\">Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999;27(2):573\u201380.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/nar\/27.2.573\" data-track-item_id=\"10.1093\/nar\/27.2.573\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fnar%2F27.2.573\" aria-label=\"Article reference 73\" data-doi=\"10.1093\/nar\/27.2.573\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DyaK1MXhtVKmtrg%3D\" aria-label=\"CAS reference 73\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=9862982\" aria-label=\"PubMed reference 73\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC148217\" aria-label=\"PubMed Central reference 73\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 73\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Tandem%20repeats%20finder%3A%20a%20program%20to%20analyze%20DNA%20sequences&amp;journal=Nucleic%20Acids%20Res&amp;doi=10.1093%2Fnar%2F27.2.573&amp;volume=27&amp;issue=2&amp;pages=573-80&amp;publication_year=1999&amp;author=Benson%2CG\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR74\">Hoff KJ, Lange S, Lomsadze A, Borodovsky M, Stanke M. BRAKER1: unsupervised RNA-seq-based genome annotation with GeneMark-ET and AUGUSTUS. Bioinformatics. 2016;32(5):767\u20139.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/bioinformatics\/btv661\" data-track-item_id=\"10.1093\/bioinformatics\/btv661\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fbioinformatics%2Fbtv661\" aria-label=\"Article reference 74\" data-doi=\"10.1093\/bioinformatics\/btv661\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC28Xht1Cis7rN\" aria-label=\"CAS reference 74\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=26559507\" aria-label=\"PubMed reference 74\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 74\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=BRAKER1%3A%20unsupervised%20RNA-seq-based%20genome%20annotation%20with%20GeneMark-ET%20and%20AUGUSTUS&amp;journal=Bioinformatics&amp;doi=10.1093%2Fbioinformatics%2Fbtv661&amp;volume=32&amp;issue=5&amp;pages=767-9&amp;publication_year=2016&amp;author=Hoff%2CKJ&amp;author=Lange%2CS&amp;author=Lomsadze%2CA&amp;author=Borodovsky%2CM&amp;author=Stanke%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR75\">Hoff KJ, Lomsadze A, Borodovsky M, Stanke M. Whole-genome annotation with BRAKER. Methods Mol Biol. 2019;1962:65\u201395.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1007\/978-1-4939-9173-0_5\" data-track-item_id=\"10.1007\/978-1-4939-9173-0_5\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1007\/978-1-4939-9173-0_5\" aria-label=\"Article reference 75\" data-doi=\"10.1007\/978-1-4939-9173-0_5\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3cXpvVCnug%3D%3D\" aria-label=\"CAS reference 75\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=31020555\" aria-label=\"PubMed reference 75\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6635606\" aria-label=\"PubMed Central reference 75\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 75\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Whole-genome%20annotation%20with%20BRAKER&amp;journal=Methods%20Mol%20Biol&amp;doi=10.1007%2F978-1-4939-9173-0_5&amp;volume=1962&amp;pages=65-95&amp;publication_year=2019&amp;author=Hoff%2CKJ&amp;author=Lomsadze%2CA&amp;author=Borodovsky%2CM&amp;author=Stanke%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR76\">Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013;29(1):15\u201321.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/bioinformatics\/bts635\" data-track-item_id=\"10.1093\/bioinformatics\/bts635\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fbioinformatics%2Fbts635\" aria-label=\"Article reference 76\" data-doi=\"10.1093\/bioinformatics\/bts635\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC38XhvV2gsbnF\" aria-label=\"CAS reference 76\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23104886\" aria-label=\"PubMed reference 76\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 76\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=STAR%3A%20ultrafast%20universal%20RNA-seq%20aligner&amp;journal=Bioinformatics&amp;doi=10.1093%2Fbioinformatics%2Fbts635&amp;volume=29&amp;issue=1&amp;pages=15-21&amp;publication_year=2013&amp;author=Dobin%2CA&amp;author=Davis%2CCA&amp;author=Schlesinger%2CF&amp;author=Drenkow%2CJ&amp;author=Zaleski%2CC&amp;author=Jha%2CS&amp;author=Batut%2CP&amp;author=Chaisson%2CM&amp;author=Gingeras%2CTR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR77\">Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, et al. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nat Genet. 2016;48(4):427\u201337.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/ng.3526\" data-track-item_id=\"10.1038\/ng.3526\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fng.3526\" aria-label=\"Article reference 77\" data-doi=\"10.1038\/ng.3526\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC28XjvVGntb8%3D\" aria-label=\"CAS reference 77\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=26950095\" aria-label=\"PubMed reference 77\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4817229\" aria-label=\"PubMed Central reference 77\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 77\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20spotted%20gar%20genome%20illuminates%20vertebrate%20evolution%20and%20facilitates%20human-teleost%20comparisons&amp;journal=Nat%20Genet&amp;doi=10.1038%2Fng.3526&amp;volume=48&amp;issue=4&amp;pages=427-37&amp;publication_year=2016&amp;author=Braasch%2CI&amp;author=Gehrke%2CAR&amp;author=Smith%2CJJ&amp;author=Kawasaki%2CK&amp;author=Manousaki%2CT&amp;author=Pasquier%2CJ&amp;author=Amores%2CA&amp;author=Desvignes%2CT&amp;author=Batzel%2CP&amp;author=Catchen%2CJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR78\">Gao G, Magadan S, Waldbieser GC, Youngblood RC, Wheeler PA, Scheffler BE, et al. A long reads-based de-novo assembly of the genome of the Arlee homozygous line reveals chromosomal rearrangements in rainbow trout. G3 Genes|Genomes|Genetics. 2021;11(4):jkab052.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/g3journal\/jkab052\" data-track-item_id=\"10.1093\/g3journal\/jkab052\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fg3journal%2Fjkab052\" aria-label=\"Article reference 78\" data-doi=\"10.1093\/g3journal\/jkab052\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38Xhs1yhtLrN\" aria-label=\"CAS reference 78\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=33616628\" aria-label=\"PubMed reference 78\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8763230\" aria-label=\"PubMed Central reference 78\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 78\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=A%20long%20reads-based%20de-novo%20assembly%20of%20the%20genome%20of%20the%20Arlee%20homozygous%20line%20reveals%20chromosomal%20rearrangements%20in%20rainbow%20trout&amp;journal=G3%20Genes%7CGenomes%7CGenetics&amp;doi=10.1093%2Fg3journal%2Fjkab052&amp;volume=11&amp;issue=4&amp;publication_year=2021&amp;author=Gao%2CG&amp;author=Magadan%2CS&amp;author=Waldbieser%2CGC&amp;author=Youngblood%2CRC&amp;author=Wheeler%2CPA&amp;author=Scheffler%2CBE&amp;author=Thorgaard%2CGH&amp;author=Palti%2CY\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR79\">Gabriel L, Hoff KJ, Br\u016fna T, Borodovsky M, Stanke M. TSEBRA: transcript selector for BRAKER. BMC Bioinf. 2021;22(1):566.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1186\/s12859-021-04482-0\" data-track-item_id=\"10.1186\/s12859-021-04482-0\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1186\/s12859-021-04482-0\" aria-label=\"Article reference 79\" data-doi=\"10.1186\/s12859-021-04482-0\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38Xis1Wisbg%3D\" aria-label=\"CAS reference 79\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 79\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=TSEBRA%3A%20transcript%20selector%20for%20BRAKER&amp;journal=BMC%20Bioinf&amp;doi=10.1186%2Fs12859-021-04482-0&amp;volume=22&amp;issue=1&amp;publication_year=2021&amp;author=Gabriel%2CL&amp;author=Hoff%2CKJ&amp;author=Br%C5%AFna%2CT&amp;author=Borodovsky%2CM&amp;author=Stanke%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR80\">Bray NL, Pimentel H, Melsted P, Pachter L. Near-optimal probabilistic RNA-seq quantification. Nat Biotechnol. 2016;34(5):525\u20137.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/nbt.3519\" data-track-item_id=\"10.1038\/nbt.3519\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fnbt.3519\" aria-label=\"Article reference 80\" data-doi=\"10.1038\/nbt.3519\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC28XlsVansL8%3D\" aria-label=\"CAS reference 80\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=27043002\" aria-label=\"PubMed reference 80\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 80\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Near-optimal%20probabilistic%20RNA-seq%20quantification&amp;journal=Nat%20Biotechnol&amp;doi=10.1038%2Fnbt.3519&amp;volume=34&amp;issue=5&amp;pages=525-7&amp;publication_year=2016&amp;author=Bray%2CNL&amp;author=Pimentel%2CH&amp;author=Melsted%2CP&amp;author=Pachter%2CL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR81\">Christensen KA, Rondeau EB, Minkley DR, Sakhrani D, Biagi CA, Flores AM, et al. The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome. PLoS One. 2020;15(10):e0240935.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1371\/journal.pone.0240935\" data-track-item_id=\"10.1371\/journal.pone.0240935\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1371%2Fjournal.pone.0240935\" aria-label=\"Article reference 81\" data-doi=\"10.1371\/journal.pone.0240935\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3cXit1KltrvJ\" aria-label=\"CAS reference 81\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=33119641\" aria-label=\"PubMed reference 81\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7595290\" aria-label=\"PubMed Central reference 81\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 81\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20sockeye%20salmon%20genome%2C%20transcriptome%2C%20and%20analyses%20identifying%20population%20defining%20regions%20of%20the%20genome&amp;journal=PLoS%20One&amp;doi=10.1371%2Fjournal.pone.0240935&amp;volume=15&amp;issue=10&amp;publication_year=2020&amp;author=Christensen%2CKA&amp;author=Rondeau%2CEB&amp;author=Minkley%2CDR&amp;author=Sakhrani%2CD&amp;author=Biagi%2CCA&amp;author=Flores%2CAM&amp;author=Withler%2CRE&amp;author=Pavey%2CSA&amp;author=Beacham%2CTD&amp;author=Godin%2CT\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR82\">Hansen T, Fjelldal PG, Lien S, Smith M, Corton C, Oliver K, et al. The genome sequence of the brown trout, Salmo trutta Linnaeus 1758. Wellcome Open Res. 2021;6:108.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.12688\/wellcomeopenres.16838.1\" data-track-item_id=\"10.12688\/wellcomeopenres.16838.1\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.12688%2Fwellcomeopenres.16838.1\" aria-label=\"Article reference 82\" data-doi=\"10.12688\/wellcomeopenres.16838.1\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=34632087\" aria-label=\"PubMed reference 82\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8488904\" aria-label=\"PubMed Central reference 82\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 82\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20genome%20sequence%20of%20the%20brown%20trout%2C%20Salmo%20trutta%20Linnaeus%201758&amp;journal=Wellcome%20Open%20Res&amp;doi=10.12688%2Fwellcomeopenres.16838.1&amp;volume=6&amp;publication_year=2021&amp;author=Hansen%2CT&amp;author=Fjelldal%2CPG&amp;author=Lien%2CS&amp;author=Smith%2CM&amp;author=Corton%2CC&amp;author=Oliver%2CK&amp;author=Skelton%2CJ&amp;author=Betteridge%2CE&amp;author=Doulcan%2CJ&amp;author=Fedrigo%2CO\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR83\">Emms DM, Kelly S. Orthofinder: phylogenetic orthology inference for comparative genomics. Genome Biol. 2019;20:1\u201314.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1186\/s13059-019-1832-y\" data-track-item_id=\"10.1186\/s13059-019-1832-y\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1186\/s13059-019-1832-y\" aria-label=\"Article reference 83\" data-doi=\"10.1186\/s13059-019-1832-y\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 83\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Orthofinder%3A%20phylogenetic%20orthology%20inference%20for%20comparative%20genomics&amp;journal=Genome%20Biol&amp;doi=10.1186%2Fs13059-019-1832-y&amp;volume=20&amp;pages=1-14&amp;publication_year=2019&amp;author=Emms%2CDM&amp;author=Kelly%2CS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR84\">Edgar RC. Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32(5):1792\u20137.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/nar\/gkh340\" data-track-item_id=\"10.1093\/nar\/gkh340\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fnar%2Fgkh340\" aria-label=\"Article reference 84\" data-doi=\"10.1093\/nar\/gkh340\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2cXisF2ks7w%3D\" aria-label=\"CAS reference 84\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=15034147\" aria-label=\"PubMed reference 84\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC390337\" aria-label=\"PubMed Central reference 84\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 84\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Muscle%3A%20multiple%20sequence%20alignment%20with%20high%20accuracy%20and%20high%20throughput&amp;journal=Nucleic%20Acids%20Res&amp;doi=10.1093%2Fnar%2Fgkh340&amp;volume=32&amp;issue=5&amp;pages=1792-7&amp;publication_year=2004&amp;author=Edgar%2CRC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR85\">Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30(9):1312\u20133.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/bioinformatics\/btu033\" data-track-item_id=\"10.1093\/bioinformatics\/btu033\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fbioinformatics%2Fbtu033\" aria-label=\"Article reference 85\" data-doi=\"10.1093\/bioinformatics\/btu033\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2cXmvFCjsbc%3D\" aria-label=\"CAS reference 85\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=24451623\" aria-label=\"PubMed reference 85\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3998144\" aria-label=\"PubMed Central reference 85\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 85\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=RAxML%20version%208%3A%20a%20tool%20for%20phylogenetic%20analysis%20and%20post-analysis%20of%20large%20phylogenies&amp;journal=Bioinformatics&amp;doi=10.1093%2Fbioinformatics%2Fbtu033&amp;volume=30&amp;issue=9&amp;pages=1312-3&amp;publication_year=2014&amp;author=Stamatakis%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR86\">Mendes FK, Vanderpool D, Fulton B, Hahn MW. Cafe 5 models variation in evolutionary rates among gene families. Bioinformatics. 2020;36(22\u201323):5516\u20138.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXht12gtLnM\" aria-label=\"CAS reference 86\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 86\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Cafe%205%20models%20variation%20in%20evolutionary%20rates%20among%20gene%20families&amp;journal=Bioinformatics&amp;volume=36&amp;issue=22%E2%80%9323&amp;pages=5516-8&amp;publication_year=2020&amp;author=Mendes%2CFK&amp;author=Vanderpool%2CD&amp;author=Fulton%2CB&amp;author=Hahn%2CMW\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR87\">Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 2007;24(8):1586\u201391.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/molbev\/msm088\" data-track-item_id=\"10.1093\/molbev\/msm088\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fmolbev%2Fmsm088\" aria-label=\"Article reference 87\" data-doi=\"10.1093\/molbev\/msm088\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2sXpsVGrs7c%3D\" aria-label=\"CAS reference 87\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=17483113\" aria-label=\"PubMed reference 87\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 87\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=PAML%204%3A%20phylogenetic%20analysis%20by%20maximum%20likelihood&amp;journal=Mol%20Biol%20Evol&amp;doi=10.1093%2Fmolbev%2Fmsm088&amp;volume=24&amp;issue=8&amp;pages=1586-91&amp;publication_year=2007&amp;author=Yang%2CZ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR88\">Kumar S, Suleski M, Craig JM, Kasprowicz AE, Sanderford M, Li M, et al. TimeTree 5: an expanded resource for species divergence times. Mol Biol Evol. 2022. <a href=\"https:\/\/doi.org\/10.1093\/molbev\/msac174\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1093\/molbev\/msac174\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1093\/molbev\/msac174<\/a>.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/molbev\/msac174\" data-track-item_id=\"10.1093\/molbev\/msac174\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fmolbev%2Fmsac174\" aria-label=\"Article reference 88\" data-doi=\"10.1093\/molbev\/msac174\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=36525539\" aria-label=\"PubMed reference 88\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9757670\" aria-label=\"PubMed Central reference 88\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 88\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=TimeTree%205%3A%20an%20expanded%20resource%20for%20species%20divergence%20times&amp;journal=Mol%20Biol%20Evol&amp;doi=10.1093%2Fmolbev%2Fmsac174&amp;publication_year=2022&amp;author=Kumar%2CS&amp;author=Suleski%2CM&amp;author=Craig%2CJM&amp;author=Kasprowicz%2CAE&amp;author=Sanderford%2CM&amp;author=Li%2CM&amp;author=Stecher%2CG&amp;author=Hedges%2CSB\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR89\">Suyama M, Torrents D, Bork P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 2006;34(suppl2):W609-12.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/nar\/gkl315\" data-track-item_id=\"10.1093\/nar\/gkl315\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fnar%2Fgkl315\" aria-label=\"Article reference 89\" data-doi=\"10.1093\/nar\/gkl315\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD28Xps1yhtL8%3D\" aria-label=\"CAS reference 89\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=16845082\" aria-label=\"PubMed reference 89\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC1538804\" aria-label=\"PubMed Central reference 89\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 89\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=PAL2NAL%3A%20robust%20conversion%20of%20protein%20sequence%20alignments%20into%20the%20corresponding%20codon%20alignments&amp;journal=Nucleic%20Acids%20Res&amp;doi=10.1093%2Fnar%2Fgkl315&amp;volume=34&amp;issue=suppl2&amp;pages=W609-12&amp;publication_year=2006&amp;author=Suyama%2CM&amp;author=Torrents%2CD&amp;author=Bork%2CP\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR90\">Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ. IQ-tree: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2015;32(1):268\u201374.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/molbev\/msu300\" data-track-item_id=\"10.1093\/molbev\/msu300\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fmolbev%2Fmsu300\" aria-label=\"Article reference 90\" data-doi=\"10.1093\/molbev\/msu300\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2MXivFGltrs%3D\" aria-label=\"CAS reference 90\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=25371430\" aria-label=\"PubMed reference 90\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 90\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=IQ-tree%3A%20a%20fast%20and%20effective%20stochastic%20algorithm%20for%20estimating%20maximum-likelihood%20phylogenies&amp;journal=Mol%20Biol%20Evol&amp;doi=10.1093%2Fmolbev%2Fmsu300&amp;volume=32&amp;issue=1&amp;pages=268-74&amp;publication_year=2015&amp;author=Nguyen%2CL-T&amp;author=Schmidt%2CHA&amp;author=Haeseler%2CA&amp;author=Minh%2CBQ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR91\">Korneliussen TS, Albrechtsen A, Nielsen R. ANGSD: analysis of next generation sequencing data. BMC Bioinformatics. 2014;15(1):356.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"noopener nofollow\" data-track-label=\"10.1186\/s12859-014-0356-4\" data-track-item_id=\"10.1186\/s12859-014-0356-4\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/link.springer.com\/doi\/10.1186\/s12859-014-0356-4\" aria-label=\"Article reference 91\" data-doi=\"10.1186\/s12859-014-0356-4\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=25420514\" aria-label=\"PubMed reference 91\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4248462\" aria-label=\"PubMed Central reference 91\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 91\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=ANGSD%3A%20analysis%20of%20next%20generation%20sequencing%20data&amp;journal=BMC%20Bioinformatics&amp;doi=10.1186%2Fs12859-014-0356-4&amp;volume=15&amp;issue=1&amp;publication_year=2014&amp;author=Korneliussen%2CTS&amp;author=Albrechtsen%2CA&amp;author=Nielsen%2CR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR92\">Shumate A, Salzberg SL. Liftoff: accurate mapping of gene annotations. Bioinformatics. 2021;37(12):1639\u201343.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/bioinformatics\/btaa1016\" data-track-item_id=\"10.1093\/bioinformatics\/btaa1016\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fbioinformatics%2Fbtaa1016\" aria-label=\"Article reference 92\" data-doi=\"10.1093\/bioinformatics\/btaa1016\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXitlGgt7bE\" aria-label=\"CAS reference 92\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=33320174\" aria-label=\"PubMed reference 92\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8289374\" aria-label=\"PubMed Central reference 92\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 92\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Liftoff%3A%20accurate%20mapping%20of%20gene%20annotations&amp;journal=Bioinformatics&amp;doi=10.1093%2Fbioinformatics%2Fbtaa1016&amp;volume=37&amp;issue=12&amp;pages=1639-43&amp;publication_year=2021&amp;author=Shumate%2CA&amp;author=Salzberg%2CSL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR93\">Bouckaert R, Vaughan TG, Barido-Sottani J, Duch\u00eane S, Fourment M, Gavryushkina A, Heled J, Jones G, K\u00fchnert D, De Maio N, et al. BEAST 2.5: an advanced software platform for bayesian evolutionary analysis. PLoS Comput Biol. 2019;15(4):e1006650.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1371\/journal.pcbi.1006650\" data-track-item_id=\"10.1371\/journal.pcbi.1006650\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1371%2Fjournal.pcbi.1006650\" aria-label=\"Article reference 93\" data-doi=\"10.1371\/journal.pcbi.1006650\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXhtlWlsLzO\" aria-label=\"CAS reference 93\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=30958812\" aria-label=\"PubMed reference 93\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6472827\" aria-label=\"PubMed Central reference 93\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 93\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=BEAST%202.5%3A%20an%20advanced%20software%20platform%20for%20bayesian%20evolutionary%20analysis&amp;journal=PLoS%20Comput%20Biol&amp;doi=10.1371%2Fjournal.pcbi.1006650&amp;volume=15&amp;issue=4&amp;publication_year=2019&amp;author=Bouckaert%2CR&amp;author=Vaughan%2CTG&amp;author=Barido-Sottani%2CJ&amp;author=Duch%C3%AAne%2CS&amp;author=Fourment%2CM&amp;author=Gavryushkina%2CA&amp;author=Heled%2CJ&amp;author=Jones%2CG&amp;author=K%C3%BChnert%2CD&amp;author=Maio%2CN\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR94\">Darriba D, Taboada GL, Doallo R, Posada D. JModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9(8):772\u2013772.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/nmeth.2109\" data-track-item_id=\"10.1038\/nmeth.2109\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fnmeth.2109\" aria-label=\"Article reference 94\" data-doi=\"10.1038\/nmeth.2109\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC38XhtFWmsbfP\" aria-label=\"CAS reference 94\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=22847109\" aria-label=\"PubMed reference 94\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4594756\" aria-label=\"PubMed Central reference 94\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 94\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=JModelTest%202%3A%20more%20models%2C%20new%20heuristics%20and%20parallel%20computing&amp;journal=Nat%20Methods&amp;doi=10.1038%2Fnmeth.2109&amp;volume=9&amp;issue=8&amp;pages=772-772&amp;publication_year=2012&amp;author=Darriba%2CD&amp;author=Taboada%2CGL&amp;author=Doallo%2CR&amp;author=Posada%2CD\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR95\">Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. Posterior summarization in bayesian phylogenetics using tracer 1.7. Syst Biol. 2018;67(5):901\u20134.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1093\/sysbio\/syy032\" data-track-item_id=\"10.1093\/sysbio\/syy032\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1093%2Fsysbio%2Fsyy032\" aria-label=\"Article reference 95\" data-doi=\"10.1093\/sysbio\/syy032\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/bmcgenomics.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXhslakt7zK\" aria-label=\"CAS reference 95\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29718447\" aria-label=\"PubMed reference 95\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6101584\" aria-label=\"PubMed Central reference 95\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 95\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Posterior%20summarization%20in%20bayesian%20phylogenetics%20using%20tracer%201.7&amp;journal=Syst%20Biol&amp;doi=10.1093%2Fsysbio%2Fsyy032&amp;volume=67&amp;issue=5&amp;pages=901-4&amp;publication_year=2018&amp;author=Rambaut%2CA&amp;author=Drummond%2CAJ&amp;author=Xie%2CD&amp;author=Baele%2CG&amp;author=Suchard%2CMA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR96\">Li H, Durbin R: Inference of human population history from individual whole-genome sequences. Nature 2011, 475(7357):493-496.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR97\">Danecek P, Bonfield JK, Liddle J, Marshall J, Ohan V, Pollard MO, Whitwham A, Keane T, McCarthy SA, Davies RM et al: Twelve years of SAMtools and BCFtools. GigaScience 2021, 10(2):giab008.<\/p>\n","protected":false},"excerpt":{"rendered":"Wang K, Zhang SH, Wang DQ, Wu JM, Wang CY, Wei QW. Conservation genetics assessment and phylogenetic relationships&hellip;\n","protected":false},"author":2,"featured_media":44518,"comment_status":"","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[7],"tags":[5209,1437,33062,61,60,2137,30949,6834,33061,6833,4791,33064,82,33063],"class_list":["post-44517","post","type-post","status-publish","format-standard","has-post-thumbnail","category-science","tag-animal-genetics-and-genomics","tag-general","tag-genome-assembly","tag-ie","tag-ireland","tag-life-sciences","tag-microarrays","tag-microbial-genetics-and-genomics","tag-n-hucho-bleekerin","tag-plant-genetics-and-genomics","tag-proteomics","tag-salmonid","tag-science","tag-tandem-repeats"],"_links":{"self":[{"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/posts\/44517","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/comments?post=44517"}],"version-history":[{"count":0,"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/posts\/44517\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/media\/44518"}],"wp:attachment":[{"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/media?parent=44517"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/categories?post=44517"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.newsbeep.com\/ie\/wp-json\/wp\/v2\/tags?post=44517"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}