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Browsing Tag

Animal Genetics and Genomics

67 posts
GGenetics
Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology
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Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology

  • October 3, 2025
Model overview We consider the following model to incorporate both additive and interaction effects: $${Y}_{i}={\sum }_{j=1}^{M}{G}_{ji}{\beta }_{j}+{\sum }_{j=1}^{M}{S}_{ji}{\gamma…
GGenetics
Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics
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Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

  • October 3, 2025
Preparation of preliminary data In all samples, the proportion of clean reads was higher than 99.5% (Table S2),…
GGenetics
Spatial architecture of development and disease
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Spatial architecture of development and disease

  • October 1, 2025
Bressan, D., Battistoni, G. & Hannon, G. J. The dawn of spatial omics. Science 381, eabq4964 (2023). Article …
GGenetics
Limited overlap between genetic effects on disease susceptibility and disease survival
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Limited overlap between genetic effects on disease susceptibility and disease survival

  • September 30, 2025
Ethics statement This study was conducted in compliance with the relevant ethical guidelines and approved by the appropriate…
BBusiness
A closed-loop method for precise genome size estimation using HiFi reads | BMC Genomics
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A closed-loop method for precise genome size estimation using HiFi reads | BMC Genomics

  • September 29, 2025
Blommaert J. Genome size evolution: towards new model systems for old questions. Proc Biol Sci. 2020;287(1933): 20201441. PubMed …
TTechnology
Variable efficiency of nonsense-mediated mRNA decay across human tissues, tumors and individuals | Genome Biology
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Variable efficiency of nonsense-mediated mRNA decay across human tissues, tumors and individuals | Genome Biology

  • September 29, 2025
Individual-level quantification of NMD efficiency We quantified the individual-level NMD efficiency (iNMDeff) by utilizing matched RNA-seq and whole-exome…
BBusiness
Machine learning and statistical inference in microbial population genomics | Genome Biology
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Machine learning and statistical inference in microbial population genomics | Genome Biology

  • September 27, 2025
Blackwell GA, Hunt M, Malone KM, Lima L, Horesh G, Alako BTF, et al. Exploring bacterial diversity via…
TTechnology
Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples | Genome Biology
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Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples | Genome Biology

  • September 27, 2025
Experimental designSamples We obtained fresh tissue samples of primary tumors from five patients with uterine cancer (Additional file…
SScience
Chromosome-level genome assembly for Sichuan taimen (Hucho bleekeri) reveals the extraordinary tandem repeat proportions and its persistent population shrinkage | BMC Genomics
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Chromosome-level genome assembly for Sichuan taimen (Hucho bleekeri) reveals the extraordinary tandem repeat proportions and its persistent population shrinkage | BMC Genomics

  • September 26, 2025
Wang K, Zhang SH, Wang DQ, Wu JM, Wang CY, Wei QW. Conservation genetics assessment and phylogenetic relationships…
BBusiness
Automated environmental metagenomics using Oxford nanopore sequencing | BMC Genomics
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Automated environmental metagenomics using Oxford nanopore sequencing | BMC Genomics

  • September 26, 2025
Sereika M, Kirkegaard RH, Karst SM, Michaelsen TY, Sørensen EA, Wollenberg RD, et al. Oxford nanopore R10.4 long-read…
GGenetics
Advances in haplotype phasing and genotype imputation
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Advances in haplotype phasing and genotype imputation

  • September 24, 2025
Voight, B. F., Kudaravalli, S., Wen, X. & Pritchard, J. K. A map of recent positive selection in…
GGenetics
The dawn of bryophyte genomics is here
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The dawn of bryophyte genomics is here

  • September 24, 2025
Puttick, M. N. et al. Curr. Biol. 28, 733–745.e2 (2018). Article  PubMed  CAS  Google Scholar  Shaw, A. J,…
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