Unlocking the regulatory code of RNA: launching the Human RNome Project | Genome Biology
The Human RNome Project aims to ensure consistent and reproducible outcomes in RNA sequencing and modification studies by…
Reconstruction of pectoral musculature in non-avialan paravians and basal birds: implications in the acquisition of flapping flight | BMC Ecology and Evolution
Of the pectoral musculature, we have selected the five muscles (i.e., mm. deltoideus scapularis/major, pectoralis, supracoracoideus, coracobrachialis brevis…
Mito-nuclear discordance reveals introgressive hybridization following vicariance and secondary contact in Iberian scorpions (Buthidae: Buthus) | BMC Ecology and Evolution
Toews DPL, Brelsford A. The biogeography of mitochondrial and nuclear discordance in animals. Mol Ecol. 2012;21:3907–30. https://doi.org/10.1111/j.1365-294X.2012.05664.x. Article …
iNOME-seq: in vivo simultaneous genome-wide mapping of chromatin accessibility, nucleosome positioning, DNA-binding protein sites, and DNA methylation in Arabidopsis | Genome Biology
Plant lines and growth conditions The plant lines used in this study were derived from A. thaliana wild-type…
SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology
Model residuals of linear regression and logistic regression Linear regression and logistic regression are regular models to fit…
Early evolution of the stonefly lineage (Insecta, Plecoptera) revealed by a new diversity of Carboniferous stem-group species | BMC Ecology and Evolution
Individual morphological characters and their phylogenetic significance Several morphological characters observed in Carbonoperlidae support the attribution to the…
Climatic data sources and limitations of ecological niche models impact the estimations of historical ranges and niche overlaps in distantly related Korean salamanders | BMC Ecology and Evolution
Pena JC, de Kamino C, Rodrigues LHY, Mariano-Neto M, de Siqueira E. MF. Assessing the conservation status of…
Inbreeding does not reduce major histocompatibility complex diversity in the banded mongoose | BMC Ecology and Evolution
Bitarello BD, De Filippo C, Teixeira JC, Schmidt JM, Kleinert P, Meyer D, Andres AM. Signatures of long-term…
A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology
K-proportion and gene homeostasis Z-Index identify regulatory genes As cells of the same type and in the same…
Adaptive ecosystem restoration to mitigate zoonotic risks
Jones, K. E. et al. Global trends in emerging infectious diseases. Nature 451, 990–993 (2008). Article CAS PubMed …
Structural and evolutionary features of red algal UV sex chromosomes | Genome Biology
To define the male and female haplotypes of the sex-determining locus in Gracilaria species, we leveraged male reference…
SpatPPI: a geometric deep learning model for predicting protein–protein interactions involving intrinsically disordered regions | Genome Biology
Data preparation In this section, we introduce the details of the datasets used in this study, including the…