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Browsing Tag

Microarrays

23 posts
TTechnology
Topology-aware functional similarity: integrating extended neighborhoods via exponential attenuation | BMC Bioinformatics
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Topology-aware functional similarity: integrating extended neighborhoods via exponential attenuation | BMC Bioinformatics

  • October 21, 2025
Experiment datasets This study systematically evaluates protein-protein interaction (PPI) networks from four model organisms: Saccharomyces cerevisiae, Arabidopsis thaliana,…
GGenetics
Genetic variation and genome-enabled selection of white lupin for key seed quality traits | BMC Genomics
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Genetic variation and genome-enabled selection of white lupin for key seed quality traits | BMC Genomics

  • October 16, 2025
Foyer CH, Lam H-M, Nguyen HT, Siddique KHM, Varshney RK, Colmer TD, et al. Neglecting legumes has compromised…
GGenetics
SAGPEK: fast and flexible approach to identify genotypes of Sanger sequencing data | BMC Bioinformatics
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SAGPEK: fast and flexible approach to identify genotypes of Sanger sequencing data | BMC Bioinformatics

  • October 14, 2025
Software architecture SAGPEK mainly processes Sanger sequencing results of two kinds of samples: diploids such as humans and…
TTechnology
The genetic influence of sex on gene expression for blood in pigs | BMC Genomics
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The genetic influence of sex on gene expression for blood in pigs | BMC Genomics

  • October 9, 2025
Data summary We collected 386 blood samples with matched genotype and gene expression data from the PigGTEx project…
GGenetics
Genomic predictions for growth and feed efficiency traits in a duck breeding population | BMC Genomics
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Genomic predictions for growth and feed efficiency traits in a duck breeding population | BMC Genomics

  • October 8, 2025
Animal population and phenotype data This study used a breeding population of Zhongxin white duck (a commercial breed…
BBusiness
Computational investigation of the sequence context of arginine/glycine-rich motifs in the human proteome | BMC Genomics
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Computational investigation of the sequence context of arginine/glycine-rich motifs in the human proteome | BMC Genomics

  • October 6, 2025
Human RG motif statistical comparisons reveal significant differences in physicochemical properties To understand important characteristics or properties of…
GGenetics
Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics
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Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

  • October 3, 2025
Preparation of preliminary data In all samples, the proportion of clean reads was higher than 99.5% (Table S2),…
BBusiness
Boosting K-nearest neighbor regression performance for longitudinal data through a novel learning approach | BMC Bioinformatics
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Boosting K-nearest neighbor regression performance for longitudinal data through a novel learning approach | BMC Bioinformatics

  • September 30, 2025
Variable-trajectory Let \(y_{it} \in {\mathbb{R}}\) denote the observed response value for the subject \(i \in \left\{ {1, \ldots…
BBusiness
A closed-loop method for precise genome size estimation using HiFi reads | BMC Genomics
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A closed-loop method for precise genome size estimation using HiFi reads | BMC Genomics

  • September 29, 2025
Blommaert J. Genome size evolution: towards new model systems for old questions. Proc Biol Sci. 2020;287(1933): 20201441. PubMed …
SScience
Chromosome-level genome assembly for Sichuan taimen (Hucho bleekeri) reveals the extraordinary tandem repeat proportions and its persistent population shrinkage | BMC Genomics
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Chromosome-level genome assembly for Sichuan taimen (Hucho bleekeri) reveals the extraordinary tandem repeat proportions and its persistent population shrinkage | BMC Genomics

  • September 26, 2025
Wang K, Zhang SH, Wang DQ, Wu JM, Wang CY, Wei QW. Conservation genetics assessment and phylogenetic relationships…
BBusiness
Automated environmental metagenomics using Oxford nanopore sequencing | BMC Genomics
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Automated environmental metagenomics using Oxford nanopore sequencing | BMC Genomics

  • September 26, 2025
Sereika M, Kirkegaard RH, Karst SM, Michaelsen TY, Sørensen EA, Wollenberg RD, et al. Oxford nanopore R10.4 long-read…
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