Microbial Genetics and Genomics

iNOME-seq: in vivo simultaneous genome-wide mapping of chromatin accessibility, nucleosome positioning, DNA-binding protein sites, and DNA methylation in Arabidopsis | Genome Biology

October 22, 2025

Plant lines and growth conditions The plant lines used in this study were derived from A. thaliana wild-type…

Natural selection exerted by historical coronavirus epidemic(s): comparative genetic analysis in China Kadoorie Biobank and UK Biobank | BMC Genomics

October 21, 2025

AppendixMethodsStatistics and reproducibility The details of each analysis are outlined in the methods section and all of the…

GGenetics

SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology

October 16, 2025

Model residuals of linear regression and logistic regression Linear regression and logistic regression are regular models to fit…

GGenetics

Genetic variation and genome-enabled selection of white lupin for key seed quality traits | BMC Genomics

October 16, 2025

Foyer CH, Lam H-M, Nguyen HT, Siddique KHM, Varshney RK, Colmer TD, et al. Neglecting legumes has compromised…

GGenetics

A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology

October 10, 2025

K-proportion and gene homeostasis Z-Index identify regulatory genes As cells of the same type and in the same…

TTechnology

The genetic influence of sex on gene expression for blood in pigs | BMC Genomics

October 9, 2025

Data summary We collected 386 blood samples with matched genotype and gene expression data from the PigGTEx project…

GGenetics

Genomic predictions for growth and feed efficiency traits in a duck breeding population | BMC Genomics

October 8, 2025

Animal population and phenotype data This study used a breeding population of Zhongxin white duck (a commercial breed…

BBusiness

Structural and evolutionary features of red algal UV sex chromosomes | Genome Biology

October 7, 2025

To define the male and female haplotypes of the sex-determining locus in Gracilaria species, we leveraged male reference…

BBusiness

Computational investigation of the sequence context of arginine/glycine-rich motifs in the human proteome | BMC Genomics

October 6, 2025

Human RG motif statistical comparisons reveal significant differences in physicochemical properties To understand important characteristics or properties of…

BBusiness

SpatPPI: a geometric deep learning model for predicting protein–protein interactions involving intrinsically disordered regions | Genome Biology

October 6, 2025

Data preparation In this section, we introduce the details of the datasets used in this study, including the…

GGenetics

Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology

October 3, 2025

Model overview We consider the following model to incorporate both additive and interaction effects: $${Y}_{i}={\sum }_{j=1}^{M}{G}_{ji}{\beta }_{j}+{\sum }_{j=1}^{M}{S}_{ji}{\gamma…

GGenetics

Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

October 3, 2025

Preparation of preliminary data In all samples, the proportion of clean reads was higher than 99.5% (Table S2),…