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Browsing Tag

Microbial Genetics and Genomics

40 posts
BBusiness
Computational investigation of the sequence context of arginine/glycine-rich motifs in the human proteome | BMC Genomics
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Computational investigation of the sequence context of arginine/glycine-rich motifs in the human proteome | BMC Genomics

  • October 6, 2025
Human RG motif statistical comparisons reveal significant differences in physicochemical properties To understand important characteristics or properties of…
BBusiness
SpatPPI: a geometric deep learning model for predicting protein–protein interactions involving intrinsically disordered regions | Genome Biology
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SpatPPI: a geometric deep learning model for predicting protein–protein interactions involving intrinsically disordered regions | Genome Biology

  • October 6, 2025
Data preparation In this section, we introduce the details of the datasets used in this study, including the…
GGenetics
Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology
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Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology

  • October 3, 2025
Model overview We consider the following model to incorporate both additive and interaction effects: $${Y}_{i}={\sum }_{j=1}^{M}{G}_{ji}{\beta }_{j}+{\sum }_{j=1}^{M}{S}_{ji}{\gamma…
GGenetics
Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics
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Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

  • October 3, 2025
Preparation of preliminary data In all samples, the proportion of clean reads was higher than 99.5% (Table S2),…
BBusiness
A closed-loop method for precise genome size estimation using HiFi reads | BMC Genomics
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A closed-loop method for precise genome size estimation using HiFi reads | BMC Genomics

  • September 29, 2025
Blommaert J. Genome size evolution: towards new model systems for old questions. Proc Biol Sci. 2020;287(1933): 20201441. PubMed …
TTechnology
Variable efficiency of nonsense-mediated mRNA decay across human tissues, tumors and individuals | Genome Biology
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Variable efficiency of nonsense-mediated mRNA decay across human tissues, tumors and individuals | Genome Biology

  • September 29, 2025
Individual-level quantification of NMD efficiency We quantified the individual-level NMD efficiency (iNMDeff) by utilizing matched RNA-seq and whole-exome…
BBusiness
Machine learning and statistical inference in microbial population genomics | Genome Biology
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Machine learning and statistical inference in microbial population genomics | Genome Biology

  • September 27, 2025
Blackwell GA, Hunt M, Malone KM, Lima L, Horesh G, Alako BTF, et al. Exploring bacterial diversity via…
TTechnology
Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples | Genome Biology
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Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples | Genome Biology

  • September 27, 2025
Experimental designSamples We obtained fresh tissue samples of primary tumors from five patients with uterine cancer (Additional file…
SScience
Chromosome-level genome assembly for Sichuan taimen (Hucho bleekeri) reveals the extraordinary tandem repeat proportions and its persistent population shrinkage | BMC Genomics
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Chromosome-level genome assembly for Sichuan taimen (Hucho bleekeri) reveals the extraordinary tandem repeat proportions and its persistent population shrinkage | BMC Genomics

  • September 26, 2025
Wang K, Zhang SH, Wang DQ, Wu JM, Wang CY, Wei QW. Conservation genetics assessment and phylogenetic relationships…
BBusiness
Automated environmental metagenomics using Oxford nanopore sequencing | BMC Genomics
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Automated environmental metagenomics using Oxford nanopore sequencing | BMC Genomics

  • September 26, 2025
Sereika M, Kirkegaard RH, Karst SM, Michaelsen TY, Sørensen EA, Wollenberg RD, et al. Oxford nanopore R10.4 long-read…
HHealth
From gut to gamete: how the microbiome influences fertility and preconception health | Microbiome
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From gut to gamete: how the microbiome influences fertility and preconception health | Microbiome

  • September 26, 2025
Inhorn MC, Patrizio P. Infertility around the globe: new thinking on gender, reproductive technologies and global movements in…
BBusiness
Fueling chromosomal gene diversification and artificial evolution with CRISPR | Genome Biology
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Fueling chromosomal gene diversification and artificial evolution with CRISPR | Genome Biology

  • September 23, 2025
Wilson DS, Keefe AD. Random mutagenesis by PCR. Curr Protoc Mol Biol. 2001;51:8–3. Google Scholar  Reetz MT, Wu…
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