{"id":105767,"date":"2025-10-30T09:58:06","date_gmt":"2025-10-30T09:58:06","guid":{"rendered":"https:\/\/www.newsbeep.com\/il\/105767\/"},"modified":"2025-10-30T09:58:06","modified_gmt":"2025-10-30T09:58:06","slug":"host-species-and-geographic-location-shape-microbial-diversity-and-functional-potential-in-the-conifer-needle-microbiome-microbiome","status":"publish","type":"post","link":"https:\/\/www.newsbeep.com\/il\/105767\/","title":{"rendered":"Host species and geographic location shape microbial diversity and functional potential in the conifer needle microbiome | Microbiome"},"content":{"rendered":"<p class=\"c-article-references__text\" id=\"ref-CR1\">Addison S, Armstrong C, Wigley K, Hartley R, Wakelin S. What matters most? Assessment of within-canopy factors influencing the needle microbiome of the model conifer, Pinus radiata. Environ Microbiome. 2023;18(1):45.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXht1SisL3P\" aria-label=\"CAS reference 1\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=37254222\" aria-label=\"PubMed reference 1\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC10230745\" aria-label=\"PubMed Central reference 1\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 1\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=What%20matters%20most%3F%20Assessment%20of%20within-canopy%20factors%20influencing%20the%20needle%20microbiome%20of%20the%20model%20conifer%2C%20Pinus%20radiata&amp;journal=Environ%20Microbiome&amp;volume=18&amp;issue=1&amp;publication_year=2023&amp;author=Addison%2CS&amp;author=Armstrong%2CC&amp;author=Wigley%2CK&amp;author=Hartley%2CR&amp;author=Wakelin%2CS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR2\">Anderson MJ. A new method for non-parametric multivariate analysis of variance: non-parametric manova for ecology. Austral Ecol. 2001;26(1):32\u201346.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 2\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=A%20new%20method%20for%20non-parametric%20multivariate%20analysis%20of%20variance%3A%20non-parametric%20manova%20for%20ecology&amp;journal=Austral%20Ecol&amp;volume=26&amp;issue=1&amp;pages=32-46&amp;publication_year=2001&amp;author=Anderson%2CMJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR3\">Arnold AE, Mej\u00eda LC, Kyllo D, Rojas EI, Maynard Z, Robbins N, et al. Fungal endophytes limit pathogen damage in a tropical tree. Proc Natl Acad Sci U S A. 2003;100(26):15649\u201354.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2cXhtVCgsw%3D%3D\" aria-label=\"CAS reference 3\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=14671327\" aria-label=\"PubMed reference 3\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC307622\" aria-label=\"PubMed Central reference 3\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 3\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Fungal%20endophytes%20limit%20pathogen%20damage%20in%20a%20tropical%20tree&amp;journal=Proc%20Natl%20Acad%20Sci%20U%20S%20A&amp;volume=100&amp;issue=26&amp;pages=15649-15654&amp;publication_year=2003&amp;author=Arnold%2CAE&amp;author=Mej%C3%ADa%2CLC&amp;author=Kyllo%2CD&amp;author=Rojas%2CEI&amp;author=Maynard%2CZ&amp;author=Robbins%2CN&amp;author=Herre%2CEA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR4\">Baldrian P. Forest microbiome: diversity, complexity and dynamics. FEMS Microbiol Rev. 2017;41(2):109\u201330.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1cXhvV2nu7zE\" aria-label=\"CAS reference 4\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=27856492\" aria-label=\"PubMed reference 4\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 4\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Forest%20microbiome%3A%20diversity%2C%20complexity%20and%20dynamics&amp;journal=FEMS%20Microbiol%20Rev&amp;volume=41&amp;issue=2&amp;pages=109-130&amp;publication_year=2017&amp;author=Baldrian%2CP\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR5\">BBMap. 2022. SourceForge. July 15, 2022. <a href=\"https:\/\/sourceforge.net\/projects\/bbmap\/\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"https:\/\/sourceforge.net\/projects\/bbmap\/\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/sourceforge.net\/projects\/bbmap\/<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR6\">Berlemont R, Martiny AC. Phylogenetic distribution of potential cellulases in bacteria. Appl Environ Microbiol. 2013;79(5):1545\u201354.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3sXkvVGks7c%3D\" aria-label=\"CAS reference 6\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23263967\" aria-label=\"PubMed reference 6\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3591946\" aria-label=\"PubMed Central reference 6\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 6\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Phylogenetic%20distribution%20of%20potential%20cellulases%20in%20bacteria&amp;journal=Appl%20Environ%20Microbiol&amp;volume=79&amp;issue=5&amp;pages=1545-1554&amp;publication_year=2013&amp;author=Berlemont%2CR&amp;author=Martiny%2CAC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR7\">Bizjak T, Sellstedt A, Gratz R, Nordin A. Presence and activity of nitrogen-fixing bacteria in Scots pine needles in a boreal forest: a nitrogen-addition experiment. Tree Physiol. 2023;43(8):1354\u201364.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB2cXmtlyjtA%3D%3D\" aria-label=\"CAS reference 7\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=37073466\" aria-label=\"PubMed reference 7\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC10423461\" aria-label=\"PubMed Central reference 7\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 7\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Presence%20and%20activity%20of%20nitrogen-fixing%20bacteria%20in%20Scots%20pine%20needles%20in%20a%20boreal%20forest%3A%20a%20nitrogen-addition%20experiment&amp;journal=Tree%20Physiol&amp;volume=43&amp;issue=8&amp;pages=1354-1364&amp;publication_year=2023&amp;author=Bizjak%2CT&amp;author=Sellstedt%2CA&amp;author=Gratz%2CR&amp;author=Nordin%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR8\">Bland C, Ramsey TL, Sabree F, Lowe M, Brown K, Kyrpides NC, Hugenholtz P. CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics. 2007;8(1):209.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=17577412\" aria-label=\"PubMed reference 8\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC1924867\" aria-label=\"PubMed Central reference 8\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 8\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=CRISPR%20Recognition%20Tool%20%28CRT%29%3A%20a%20tool%20for%20automatic%20detection%20of%20clustered%20regularly%20interspaced%20palindromic%20repeats&amp;journal=BMC%20Bioinformatics&amp;volume=8&amp;issue=1&amp;publication_year=2007&amp;author=Bland%2CC&amp;author=Ramsey%2CTL&amp;author=Sabree%2CF&amp;author=Lowe%2CM&amp;author=Brown%2CK&amp;author=Kyrpides%2CNC&amp;author=Hugenholtz%2CP\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR9\">Bobay LM, Ochman H. 2017. Biological species are universal across life\u2019s domains. Genome Biol Evol. 2017. <a href=\"https:\/\/academic.oup.com\/gbe\/article\/9\/3\/491\/2982379\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"https:\/\/academic.oup.com\/gbe\/article\/9\/3\/491\/2982379\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/academic.oup.com\/gbe\/article\/9\/3\/491\/2982379<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR10\">Bograd A, Oppenheimer-Shaanan Y, Levy A. Plasmids, prophages, and defense systems are depleted from plant microbiota genomes. Genome Biol. 2025;26(1):163.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=40500753\" aria-label=\"PubMed reference 10\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC12153167\" aria-label=\"PubMed Central reference 10\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 10\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Plasmids%2C%20prophages%2C%20and%20defense%20systems%20are%20depleted%20from%20plant%20microbiota%20genomes&amp;journal=Genome%20Biol&amp;volume=26&amp;issue=1&amp;publication_year=2025&amp;author=Bograd%2CA&amp;author=Oppenheimer-Shaanan%2CY&amp;author=Levy%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR11\">Bonan GB. Forests and climate change: forcings, feedbacks, and the climate benefits of forests. Science. 2008;320(5882):1444\u20139.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD1cXntVWqs7s%3D\" aria-label=\"CAS reference 11\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=18556546\" aria-label=\"PubMed reference 11\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 11\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Forests%20and%20climate%20change%3A%20forcings%2C%20feedbacks%2C%20and%20the%20climate%20benefits%20of%20forests&amp;journal=Science&amp;volume=320&amp;issue=5882&amp;pages=1444-1449&amp;publication_year=2008&amp;author=Bonan%2CGB\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR12\">Bowers RM, Clum A, Tice H, Lim J, Singh K, Ciobanu D, et al. Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community. BMC Genomics. 2015;16(1):856.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=26496746\" aria-label=\"PubMed reference 12\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4619416\" aria-label=\"PubMed Central reference 12\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 12\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Impact%20of%20library%20preparation%20protocols%20and%20template%20quantity%20on%20the%20metagenomic%20reconstruction%20of%20a%20mock%20microbial%20community&amp;journal=BMC%20Genomics&amp;volume=16&amp;issue=1&amp;publication_year=2015&amp;author=Bowers%2CRM&amp;author=Clum%2CA&amp;author=Tice%2CH&amp;author=Lim%2CJ&amp;author=Singh%2CK&amp;author=Ciobanu%2CD&amp;author=Ngan%2CCY&amp;author=Cheng%2CJ-F&amp;author=Tringe%2CSG&amp;author=Woyke%2CT\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR13\">Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2017;35(8):725\u201331.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2sXht12lsb3O\" aria-label=\"CAS reference 13\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=28787424\" aria-label=\"PubMed reference 13\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6436528\" aria-label=\"PubMed Central reference 13\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 13\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Minimum%20information%20about%20a%20single%20amplified%20genome%20%28MISAG%29%20and%20a%20metagenome-assembled%20genome%20%28MIMAG%29%20of%20bacteria%20and%20archaea&amp;journal=Nat%20Biotechnol&amp;volume=35&amp;issue=8&amp;pages=725-731&amp;publication_year=2017&amp;author=Bowers%2CRM&amp;author=Kyrpides%2CNC&amp;author=Stepanauskas%2CR&amp;author=Harmon-Smith%2CM&amp;author=Doud%2CD&amp;author=Reddy%2CTBK&amp;author=Schulz%2CF\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR14\">Bowers RM, Sullivan AP, Costello EK, Collett JL, Knight R, Fierer N. Sources of bacteria in outdoor air across cities in the Midwestern United States. Appl Environ Microbiol. 2011;77(18):6350\u20136.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3MXhtl2isLrE\" aria-label=\"CAS reference 14\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=21803902\" aria-label=\"PubMed reference 14\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3187178\" aria-label=\"PubMed Central reference 14\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 14\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Sources%20of%20bacteria%20in%20outdoor%20air%20across%20cities%20in%20the%20Midwestern%20United%20States&amp;journal=Appl%20Environ%20Microbiol&amp;volume=77&amp;issue=18&amp;pages=6350-6356&amp;publication_year=2011&amp;author=Bowers%2CRM&amp;author=Sullivan%2CAP&amp;author=Costello%2CEK&amp;author=Collett%2CJL&amp;author=Knight%2CR&amp;author=Fierer%2CN\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR15\">Bringel F, Cou\u00e9e I. Pivotal Roles of Phyllosphere Microorganisms at the Interface between Plant Functioning and Atmospheric Trace Gas Dynamics. Front Microbiol. 2015;6(May):486.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=26052316\" aria-label=\"PubMed reference 15\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4440916\" aria-label=\"PubMed Central reference 15\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 15\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Pivotal%20Roles%20of%20Phyllosphere%20Microorganisms%20at%20the%20Interface%20between%20Plant%20Functioning%20and%20Atmospheric%20Trace%20Gas%20Dynamics&amp;journal=Front%20Microbiol&amp;volume=6&amp;issue=May&amp;publication_year=2015&amp;author=Bringel%2CF&amp;author=Cou%C3%A9e%2CI\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR16\">Camargo AP, Roux S, Schulz F, Babinski M, Xu Y, Hu B, et al. Identification of mobile genetic elements with geNomad. Nat Biotechnol. 2023. <a href=\"https:\/\/doi.org\/10.1038\/s41587-023-01953-y\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1038\/s41587-023-01953-y\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1038\/s41587-023-01953-y<\/a>.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41587-023-01953-y\" data-track-item_id=\"10.1038\/s41587-023-01953-y\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41587-023-01953-y\" aria-label=\"Article reference 16\" data-doi=\"10.1038\/s41587-023-01953-y\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=37735266\" aria-label=\"PubMed reference 16\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC11324519\" aria-label=\"PubMed Central reference 16\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 16\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Identification%20of%20mobile%20genetic%20elements%20with%20geNomad&amp;journal=Nat%20Biotechnol&amp;doi=10.1038%2Fs41587-023-01953-y&amp;publication_year=2023&amp;author=Camargo%2CAP&amp;author=Roux%2CS&amp;author=Schulz%2CF&amp;author=Babinski%2CM&amp;author=Xu%2CY&amp;author=Hu%2CB&amp;author=Chain%2CPSG&amp;author=Nayfach%2CS&amp;author=Kyrpides%2CNC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR17\">Cantalapiedra CP, Hern\u00e1ndez-Plaza A, Letunic I, Bork P, Huerta-Cepas J. EggNOG-Mapper v2: Functional annotation, orthology assignments, and domain prediction at the metagenomic scale. Mol Biol Evol. 2021;38(12):5825\u20139.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38Xhslyrt78%3D\" aria-label=\"CAS reference 17\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=34597405\" aria-label=\"PubMed reference 17\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8662613\" aria-label=\"PubMed Central reference 17\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 17\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=EggNOG-Mapper%20v2%3A%20Functional%20annotation%2C%20orthology%20assignments%2C%20and%20domain%20prediction%20at%20the%20metagenomic%20scale&amp;journal=Mol%20Biol%20Evol&amp;volume=38&amp;issue=12&amp;pages=5825-5829&amp;publication_year=2021&amp;author=Cantalapiedra%2CCP&amp;author=Hern%C3%A1ndez-Plaza%2CA&amp;author=Letunic%2CI&amp;author=Bork%2CP&amp;author=Huerta-Cepas%2CJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR18\">Capella-Guti\u00e9rrez S, Silla-Mart\u00ednez JM, Gabald\u00f3n T. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 2009;25(15):1972.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=19505945\" aria-label=\"PubMed reference 18\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC2712344\" aria-label=\"PubMed Central reference 18\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 18\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=trimAl%3A%20a%20tool%20for%20automated%20alignment%20trimming%20in%20large-scale%20phylogenetic%20analyses&amp;journal=Bioinformatics&amp;volume=25&amp;issue=15&amp;publication_year=2009&amp;author=Capella-Guti%C3%A9rrez%2CS&amp;author=Silla-Mart%C3%ADnez%2CJM&amp;author=Gabald%C3%B3n%2CT\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR19\">Caro-Quintero A, Konstantinidis KT. Inter-Phylum HGT Has Shaped the Metabolism of Many Mesophilic and Anaerobic Bacteria. ISME J. 2015;9(4):958\u201367.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2MXkvVyitLY%3D\" aria-label=\"CAS reference 19\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=25314320\" aria-label=\"PubMed reference 19\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 19\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Inter-Phylum%20HGT%20Has%20Shaped%20the%20Metabolism%20of%20Many%20Mesophilic%20and%20Anaerobic%20Bacteria&amp;journal=ISME%20J&amp;volume=9&amp;issue=4&amp;pages=958-967&amp;publication_year=2015&amp;author=Caro-Quintero%2CA&amp;author=Konstantinidis%2CKT\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR20\">Carper DL, Lawrence TJ, Quiroz D, Kueppers LM, Frank AC. Needle Bacterial Community Structure across the Species Range of Limber Pine. ISME Commun. 2024;4(1):ycae062.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=38800125\" aria-label=\"PubMed reference 20\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC11128189\" aria-label=\"PubMed Central reference 20\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 20\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Needle%20Bacterial%20Community%20Structure%20across%20the%20Species%20Range%20of%20Limber%20Pine&amp;journal=ISME%20Commun&amp;volume=4&amp;issue=1&amp;publication_year=2024&amp;author=Carper%2CDL&amp;author=Lawrence%2CTJ&amp;author=Quiroz%2CD&amp;author=Kueppers%2CLM&amp;author=Frank%2CAC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR21\">Carrell AA, Carper DL, Frank AC. Subalpine Conifers in Different Geographical Locations Host Highly Similar Foliar Bacterial Endophyte Communities. FEMS Microbiol Ecol. 2016;92(8). <a href=\"https:\/\/doi.org\/10.1093\/femsec\/fiw124\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1093\/femsec\/fiw124\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1093\/femsec\/fiw124<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR22\">Carroll G. Fungal endophytes in stems and leaves: from latent pathogen to mutualistic symbiont. Ecology. 1988;69(1):2\u20139.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 22\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Fungal%20endophytes%20in%20stems%20and%20leaves%3A%20from%20latent%20pathogen%20to%20mutualistic%20symbiont&amp;journal=Ecology&amp;volume=69&amp;issue=1&amp;pages=2-9&amp;publication_year=1988&amp;author=Carroll%2CG\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR23\">Chan PP, Lowe TM. tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences. In Gene Prediction: Methods and Protocols, edited by Martin Kollmar, 2019:1\u201314. New York, NY: Springer New York.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR24\">Chaumeil PA, Mussig AJ, Hugenholtz P, Parks DH. GTDB-Tk: a toolkit to classify genomes with the genome taxonomy database. Bioinformatics. 2020;36(6):1925\u20137.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3cXisFCktb7I\" aria-label=\"CAS reference 24\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 24\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=GTDB-Tk%3A%20a%20toolkit%20to%20classify%20genomes%20with%20the%20genome%20taxonomy%20database&amp;journal=Bioinformatics&amp;volume=36&amp;issue=6&amp;pages=1925-1927&amp;publication_year=2020&amp;author=Chaumeil%2CPA&amp;author=Mussig%2CAJ&amp;author=Hugenholtz%2CP&amp;author=Parks%2CDH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR25\">Chen IMA, Chu K, Palaniappan K, Ratner A, Huang J, Huntemann M, Hajek P, et al. The IMG\/M data management and analysis system v.6.0: new tools and advanced capabilities.\u00a0Nucleic Acids Res.\u00a02021;49(D1):D751\u201363.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR26\">Chen IMA, Chu K, Palaniappan K, Ratner A, Huang J, Huntemann M, Hajek P, et al. The IMG\/M data management and analysis system v.7: content updates and new features. Nucleic Acids Res.\u00a02023;51(D1):D723\u201332.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR27\">Chklovski A, Parks DH, Woodcroft BJ, Tyson GW. CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods. 2023;20(8):1203\u201312.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXhsFOiur3J\" aria-label=\"CAS reference 27\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=37500759\" aria-label=\"PubMed reference 27\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 27\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=CheckM2%3A%20a%20rapid%2C%20scalable%20and%20accurate%20tool%20for%20assessing%20microbial%20genome%20quality%20using%20machine%20learning&amp;journal=Nat%20Methods&amp;volume=20&amp;issue=8&amp;pages=1203-1212&amp;publication_year=2023&amp;author=Chklovski%2CA&amp;author=Parks%2CDH&amp;author=Woodcroft%2CBJ&amp;author=Tyson%2CGW\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR28\">Clarke KR. Non-parametric multivariate analyses of changes in community structure. Aust J Ecol. 1993;18(1):117\u201343.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 28\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Non-parametric%20multivariate%20analyses%20of%20changes%20in%20community%20structure&amp;journal=Aust%20J%20Ecol&amp;volume=18&amp;issue=1&amp;pages=117-143&amp;publication_year=1993&amp;author=Clarke%2CKR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR29\">Cui J, Zhang M, Chen L, Zhang S, Luo Y, Cao W, et al. Methanotrophs Contribute to Nitrogen Fixation in Emergent Macrophytes. Front Microbiol. 2022;13(April):851424.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35479617\" aria-label=\"PubMed reference 29\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9036440\" aria-label=\"PubMed Central reference 29\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 29\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Methanotrophs%20Contribute%20to%20Nitrogen%20Fixation%20in%20Emergent%20Macrophytes&amp;journal=Front%20Microbiol&amp;volume=13&amp;issue=April&amp;publication_year=2022&amp;author=Cui%2CJ&amp;author=Zhang%2CM&amp;author=Chen%2CL&amp;author=Zhang%2CS&amp;author=Luo%2CY&amp;author=Cao%2CW&amp;author=Zhao%2CJi&amp;author=Wang%2CL&amp;author=Jia%2CZ&amp;author=Bao%2CZ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR30\">Cuthbertson L, Nodwell JR. The TetR Family of Regulators. Microbiol Mol Biol Rev. 2013;77(3):440\u201375.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3sXhslWhs7jF\" aria-label=\"CAS reference 30\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=24006471\" aria-label=\"PubMed reference 30\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3811609\" aria-label=\"PubMed Central reference 30\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 30\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20TetR%20Family%20of%20Regulators&amp;journal=Microbiol%20Mol%20Biol%20Rev&amp;volume=77&amp;issue=3&amp;pages=440-475&amp;publication_year=2013&amp;author=Cuthbertson%2CL&amp;author=Nodwell%2CJR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR31\">Delgado LF, Andersson AF. Evaluating metagenomic assembly approaches for biome-specific gene catalogues. Microbiome. 2022;10(1):72.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38Xht1Gqt7nE\" aria-label=\"CAS reference 31\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35524337\" aria-label=\"PubMed reference 31\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9074274\" aria-label=\"PubMed Central reference 31\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 31\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Evaluating%20metagenomic%20assembly%20approaches%20for%20biome-specific%20gene%20catalogues&amp;journal=Microbiome&amp;volume=10&amp;issue=1&amp;publication_year=2022&amp;author=Delgado%2CLF&amp;author=Andersson%2CAF\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR32\">D\u00edaz-Mu\u00f1oz SL. \u201cViral Coinfection Is Shaped by Host Ecology and Virus-Virus Interactions across Diverse Microbial Taxa and Environments.\u201d Virus Evol. 2017;3(1):vex011.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=28469939\" aria-label=\"PubMed reference 32\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5407056\" aria-label=\"PubMed Central reference 32\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 32\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CViral%20Coinfection%20Is%20Shaped%20by%20Host%20Ecology%20and%20Virus-Virus%20Interactions%20across%20Diverse%20Microbial%20Taxa%20and%20Environments%E2%80%9D&amp;journal=Virus%20Evol&amp;volume=3&amp;issue=1&amp;publication_year=2017&amp;author=D%C3%ADaz-Mu%C3%B1oz%2CSL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR33\">Dove NC, Carrell AA, Engle NL, Klingeman DM, Rodriguez M, Wahl T, Tschaplinski TJ, Muchero W, Schadt CW, Cregger MA. Relationships between Sphaerulina musiva infection and the Populus microbiome and metabolome.\u00a0mSystems. 2022;7(4):e0012022.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR34\">Dudareva N, Pichersky E, Gershenzon J. Biochemistry of plant volatiles. Plant Physiol. 2004;135(4):1893\u2013902.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2cXnt1Ghu7w%3D\" aria-label=\"CAS reference 34\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=15326281\" aria-label=\"PubMed reference 34\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC520761\" aria-label=\"PubMed Central reference 34\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 34\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Biochemistry%20of%20plant%20volatiles&amp;journal=Plant%20Physiol&amp;volume=135&amp;issue=4&amp;pages=1893-1902&amp;publication_year=2004&amp;author=Dudareva%2CN&amp;author=Pichersky%2CE&amp;author=Gershenzon%2CJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR35\">Emms DM, Kelly S. Orthofinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy. Genome Biol. 2015;16(1):157.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=26243257\" aria-label=\"PubMed reference 35\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4531804\" aria-label=\"PubMed Central reference 35\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 35\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Orthofinder%3A%20solving%20fundamental%20biases%20in%20whole%20genome%20comparisons%20dramatically%20improves%20orthogroup%20inference%20accuracy&amp;journal=Genome%20Biol&amp;volume=16&amp;issue=1&amp;publication_year=2015&amp;author=Emms%2CDM&amp;author=Kelly%2CS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR36\">Erill I, Campoy S, Mazon G, Barb\u00e9 J. Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain. Nucleic Acids Res. 2006;34(1):66\u201377.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD28Xmsl2ntw%3D%3D\" aria-label=\"CAS reference 36\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=16407325\" aria-label=\"PubMed reference 36\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC1326238\" aria-label=\"PubMed Central reference 36\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 36\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Dispersal%20and%20regulation%20of%20an%20adaptive%20mutagenesis%20cassette%20in%20the%20bacteria%20domain&amp;journal=Nucleic%20Acids%20Res&amp;volume=34&amp;issue=1&amp;pages=66-77&amp;publication_year=2006&amp;author=Erill%2CI&amp;author=Campoy%2CS&amp;author=Mazon%2CG&amp;author=Barb%C3%A9%2CJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR37\">Ewers FW, Schmid R. Longevity of needle fascicles of Pinus longaeva (bristlecone pine) and other North American pines. Oecologia. 1981;51(1):107\u201315.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=28310317\" aria-label=\"PubMed reference 37\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 37\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Longevity%20of%20needle%20fascicles%20of%20Pinus%20longaeva%20%28bristlecone%20pine%29%20and%20other%20North%20American%20pines&amp;journal=Oecologia&amp;volume=51&amp;issue=1&amp;pages=107-115&amp;publication_year=1981&amp;author=Ewers%2CFW&amp;author=Schmid%2CR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR38\">Faiola CL, Buchholz A, Kari E, Yli-Piril\u00e4 P, Holopainen JK, Kivim\u00e4enp\u00e4\u00e4 M, et al. Terpene Composition Complexity Controls Secondary Organic Aerosol Yields from Scots Pine Volatile Emissions. Sci Rep. 2018;8(1):1\u201313.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1cXhs1Krs7vO\" aria-label=\"CAS reference 38\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 38\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Terpene%20Composition%20Complexity%20Controls%20Secondary%20Organic%20Aerosol%20Yields%20from%20Scots%20Pine%20Volatile%20Emissions&amp;journal=Sci%20Rep&amp;volume=8&amp;issue=1&amp;pages=1-13&amp;publication_year=2018&amp;author=Faiola%2CCL&amp;author=Buchholz%2CA&amp;author=Kari%2CE&amp;author=Yli-Piril%C3%A4%2CP&amp;author=Holopainen%2CJK&amp;author=Kivim%C3%A4enp%C3%A4%C3%A4%2CM&amp;author=Miettinen%2CP\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR39\">Fanin N, Lin D, Freschet GT, Keiser AD, Augusto L, Wardle DA, et al. \u201cHome-Field Advantage of Litter Decomposition: From the Phyllosphere to the Soil.\u201d New Phytol. 2021;231(4):1353\u20138.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=34008201\" aria-label=\"PubMed reference 39\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 39\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CHome-Field%20Advantage%20of%20Litter%20Decomposition%3A%20From%20the%20Phyllosphere%20to%20the%20Soil%E2%80%9D&amp;journal=New%20Phytol&amp;volume=231&amp;issue=4&amp;pages=1353-1358&amp;publication_year=2021&amp;author=Fanin%2CN&amp;author=Lin%2CD&amp;author=Freschet%2CGT&amp;author=Keiser%2CAD&amp;author=Augusto%2CL&amp;author=Wardle%2CDA&amp;author=Veen%2CGFC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR40\">Frasz SL, Walker AK, Nsiama TK, Adams GW, Miller JD. \u201cDistribution of the Foliar Fungal Endophyte Phialocephala Scopiformis and Its Toxin in the Crown of a Mature White Spruce Tree as Revealed by Chemical and qPCR Analyses.\u201d Can J Forest Res. 2014;44(9):1138\u201343.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2cXht1ClurzJ\" aria-label=\"CAS reference 40\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 40\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CDistribution%20of%20the%20Foliar%20Fungal%20Endophyte%20Phialocephala%20Scopiformis%20and%20Its%20Toxin%20in%20the%20Crown%20of%20a%20Mature%20White%20Spruce%20Tree%20as%20Revealed%20by%20Chemical%20and%20qPCR%20Analyses%E2%80%9D&amp;journal=Can%20J%20Forest%20Res&amp;volume=44&amp;issue=9&amp;pages=1138-1143&amp;publication_year=2014&amp;author=Frasz%2CSL&amp;author=Walker%2CAK&amp;author=Nsiama%2CTK&amp;author=Adams%2CGW&amp;author=Miller%2CJD\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR41\">Frost LS, Leplae R, Summers AO, Toussaint A. Mobile genetic elements: the agents of open source evolution. Nat Rev Microbiol. 2005;3(9):722\u201332.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2MXps1KjtbY%3D\" aria-label=\"CAS reference 41\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=16138100\" aria-label=\"PubMed reference 41\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 41\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Mobile%20genetic%20elements%3A%20the%20agents%20of%20open%20source%20evolution&amp;journal=Nat%20Rev%20Microbiol&amp;volume=3&amp;issue=9&amp;pages=722-732&amp;publication_year=2005&amp;author=Frost%2CLS&amp;author=Leplae%2CR&amp;author=Summers%2CAO&amp;author=Toussaint%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR42\">Garzoli S, Masci VL, Caradonna V, Tiezzi A, Giacomello P, Ovidi E. Liquid and vapor phase of four conifer-derived essential oils: comparison of chemical compositions and antimicrobial and antioxidant properties. Pharmaceuticals (Basel, Switzerland). 2021;14(2):134.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXmvFaltrs%3D\" aria-label=\"CAS reference 42\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=33567501\" aria-label=\"PubMed reference 42\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 42\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Liquid%20and%20vapor%20phase%20of%20four%20conifer-derived%20essential%20oils%3A%20comparison%20of%20chemical%20compositions%20and%20antimicrobial%20and%20antioxidant%20properties&amp;journal=Pharmaceuticals%20%28Basel%2C%20Switzerland%29&amp;volume=14&amp;issue=2&amp;publication_year=2021&amp;author=Garzoli%2CS&amp;author=Masci%2CVL&amp;author=Caradonna%2CV&amp;author=Tiezzi%2CA&amp;author=Giacomello%2CP&amp;author=Ovidi%2CE\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR43\">George PBL, Leclerc S, Turgeon N, Veillette M, Duchaine C. \u201cConifer Needle Phyllosphere as a Potential Passive Monitor of Bioaerosolised Antibiotic Resistance Genes.\u201d Antibiotics. 2022;11(7):907.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38XhvFOnurvJ\" aria-label=\"CAS reference 43\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35884161\" aria-label=\"PubMed reference 43\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9312085\" aria-label=\"PubMed Central reference 43\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 43\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CConifer%20Needle%20Phyllosphere%20as%20a%20Potential%20Passive%20Monitor%20of%20Bioaerosolised%20Antibiotic%20Resistance%20Genes%E2%80%9D&amp;journal=Antibiotics&amp;volume=11&amp;issue=7&amp;publication_year=2022&amp;author=George%2CPBL&amp;author=Leclerc%2CS&amp;author=Turgeon%2CN&amp;author=Veillette%2CM&amp;author=Duchaine%2CC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR44\">Guerrieri R, C\u00e1liz J, Mattana S, Barcel\u00f3 A, Candela M, Elustondo D, et al. Substantial contribution of tree canopy nitrifiers to nitrogen fluxes in European forests. Nat Geosci. 2024;17(2):130\u20136.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB2cXjtlGqtbk%3D\" aria-label=\"CAS reference 44\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 44\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Substantial%20contribution%20of%20tree%20canopy%20nitrifiers%20to%20nitrogen%20fluxes%20in%20European%20forests&amp;journal=Nat%20Geosci&amp;volume=17&amp;issue=2&amp;pages=130-136&amp;publication_year=2024&amp;author=Guerrieri%2CR&amp;author=C%C3%A1liz%2CJ&amp;author=Mattana%2CS&amp;author=Barcel%C3%B3%2CA&amp;author=Candela%2CM&amp;author=Elustondo%2CD&amp;author=Fortmann%2CH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR45\">Guo J, Bolduc B, Zayed AA, Varsani A, Dominguez-Huerta G, Delmont TO, et al. VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses. Microbiome. 2021;9(1):37.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=33522966\" aria-label=\"PubMed reference 45\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7852108\" aria-label=\"PubMed Central reference 45\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 45\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=VirSorter2%3A%20a%20multi-classifier%2C%20expert-guided%20approach%20to%20detect%20diverse%20DNA%20and%20RNA%20viruses&amp;journal=Microbiome&amp;volume=9&amp;issue=1&amp;publication_year=2021&amp;author=Guo%2CJ&amp;author=Bolduc%2CB&amp;author=Zayed%2CAA&amp;author=Varsani%2CA&amp;author=Dominguez-Huerta%2CG&amp;author=Delmont%2CTO&amp;author=Pratama%2CAA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR46\">Hakola H, Tarvainen V, Laurila T, Hiltunen V, Hell\u00e9n H, Keronen P. \u201cSeasonal Variation of VOC Concentrations above a Boreal Coniferous Forest.\u201d Atmos Environ. 2003;37(12):1623\u201334.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD3sXitVGjtbg%3D\" aria-label=\"CAS reference 46\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 46\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CSeasonal%20Variation%20of%20VOC%20Concentrations%20above%20a%20Boreal%20Coniferous%20Forest%E2%80%9D&amp;journal=Atmos%20Environ&amp;volume=37&amp;issue=12&amp;pages=1623-1634&amp;publication_year=2003&amp;author=Hakola%2CH&amp;author=Tarvainen%2CV&amp;author=Laurila%2CT&amp;author=Hiltunen%2CV&amp;author=Hell%C3%A9n%2CH&amp;author=Keronen%2CP\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR47\">Heijden MGAVD, Martin FM, Selosse M-A, Sanders IR. \u201cMycorrhizal Ecology and Evolution: The Past, the Present, and the Future.\u201d New Phytol. 2015;205(4):1406\u201323.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=25639293\" aria-label=\"PubMed reference 47\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 47\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CMycorrhizal%20Ecology%20and%20Evolution%3A%20The%20Past%2C%20the%20Present%2C%20and%20the%20Future%E2%80%9D&amp;journal=New%20Phytol&amp;volume=205&amp;issue=4&amp;pages=1406-1423&amp;publication_year=2015&amp;author=Heijden%2CMGAVD&amp;author=Martin%2CFM&amp;author=Selosse%2CM-A&amp;author=Sanders%2CIR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR48\">Heil JA, Simler-Williamson A, Striluk ML, Trawick D, Capezza R, DeFehr C, et al. Weather and leaf age separately contribute to temporal shifts in phyllosphere fungal community structure in sagebrush. Ecosphere. 2025;16(6):e70295.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 48\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Weather%20and%20leaf%20age%20separately%20contribute%20to%20temporal%20shifts%20in%20phyllosphere%20fungal%20community%20structure%20in%20sagebrush&amp;journal=Ecosphere&amp;volume=16&amp;issue=6&amp;publication_year=2025&amp;author=Heil%2CJA&amp;author=Simler-Williamson%2CA&amp;author=Striluk%2CML&amp;author=Trawick%2CD&amp;author=Capezza%2CR&amp;author=DeFehr%2CC&amp;author=Osorio%2CA&amp;author=Finney%2CB&amp;author=Turner%2CKG&amp;author=Bittleston%2CLS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR49\">Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS. UFboot2: improving the ultrafast bootstrap approximation. Mol Biol Evol. 2018;35(2):518\u201322.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1cXitlyjs7rK\" aria-label=\"CAS reference 49\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29077904\" aria-label=\"PubMed reference 49\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 49\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=UFboot2%3A%20improving%20the%20ultrafast%20bootstrap%20approximation&amp;journal=Mol%20Biol%20Evol&amp;volume=35&amp;issue=2&amp;pages=518-522&amp;publication_year=2018&amp;author=Hoang%2CDT&amp;author=Chernomor%2CO&amp;author=Haeseler%2CA&amp;author=Minh%2CBQ&amp;author=Vinh%2CLS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR50\">Hofmeyr S, Egan R, Georganas E, Copeland AC, Riley R, Clum A, Eloe-Fadrosh E, et al. Terabase-scale metagenome coassembly with MetaHipMer. Sci Rep. 2020;10(1). <a href=\"https:\/\/doi.org\/10.1038\/s41598-020-67416-5\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1038\/s41598-020-67416-5\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1038\/s41598-020-67416-5<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR51\">Howe A, Stopnisek N, Dooley SK, Yang F, Grady KL, Shade A. Seasonal activities of the phyllosphere microbiome of perennial crops. Nat Commun. 2023;14(1):1039.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXjvFequr4%3D\" aria-label=\"CAS reference 51\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=36823152\" aria-label=\"PubMed reference 51\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9950430\" aria-label=\"PubMed Central reference 51\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 51\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Seasonal%20activities%20of%20the%20phyllosphere%20microbiome%20of%20perennial%20crops&amp;journal=Nat%20Commun&amp;volume=14&amp;issue=1&amp;publication_year=2023&amp;author=Howe%2CA&amp;author=Stopnisek%2CN&amp;author=Dooley%2CSK&amp;author=Yang%2CF&amp;author=Grady%2CKL&amp;author=Shade%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR52\">Huang X-R, Neilson R, Yang L-Y, Deng J-J, Shu-Yi-Dan Zhou Hu, Li Y-G, et al. Urban Greenspace Types Influence the Microbial Community Assembly and Antibiotic Resistome More in the Phyllosphere than in the Soil. Chemosphere. 2023;338(139533):139533.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXhsV2msrfO\" aria-label=\"CAS reference 52\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=37459932\" aria-label=\"PubMed reference 52\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 52\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Urban%20Greenspace%20Types%20Influence%20the%20Microbial%20Community%20Assembly%20and%20Antibiotic%20Resistome%20More%20in%20the%20Phyllosphere%20than%20in%20the%20Soil&amp;journal=Chemosphere&amp;volume=338&amp;issue=139533&amp;publication_year=2023&amp;author=Huang%2CX-R&amp;author=Neilson%2CR&amp;author=Yang%2CL-Y&amp;author=Deng%2CJ-J&amp;author=Shu-Yi-Dan%20Zhou%2CHu&amp;author=Li%2CY-G&amp;author=Yang%2CX-R\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR53\">Hyatt D, Chen G-L, Locascio PF, Land ML, Larimer FW, Hauser LJ. \u201cProdigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification.\u201d BMC Bioinformatics. 2010;11(March):119.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=20211023\" aria-label=\"PubMed reference 53\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC2848648\" aria-label=\"PubMed Central reference 53\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 53\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CProdigal%3A%20Prokaryotic%20Gene%20Recognition%20and%20Translation%20Initiation%20Site%20Identification%E2%80%9D&amp;journal=BMC%20Bioinformatics&amp;volume=11&amp;issue=March&amp;publication_year=2010&amp;author=Hyatt%2CD&amp;author=Chen%2CG-L&amp;author=Locascio%2CPF&amp;author=Land%2CML&amp;author=Larimer%2CFW&amp;author=Hauser%2CLJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR54\">Innerebner G, Knief C, Vorholt JA. Protection of Arabidopsis thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in a controlled model system. Appl Environ Microbiol. 2011;77(10):3202\u201310.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3MXns1Sltro%3D\" aria-label=\"CAS reference 54\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=21421777\" aria-label=\"PubMed reference 54\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3126462\" aria-label=\"PubMed Central reference 54\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 54\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Protection%20of%20Arabidopsis%20thaliana%20against%20leaf-pathogenic%20Pseudomonas%20syringae%20by%20Sphingomonas%20strains%20in%20a%20controlled%20model%20system&amp;journal=Appl%20Environ%20Microbiol&amp;volume=77&amp;issue=10&amp;pages=3202-3210&amp;publication_year=2011&amp;author=Innerebner%2CG&amp;author=Knief%2CC&amp;author=Vorholt%2CJA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR55\">Jain C, Rodriguez-R LM, Phillippy AM, Konstantinidis KT, Aluru S. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries. Nat Commun. 2018;9(1):5114.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=30504855\" aria-label=\"PubMed reference 55\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6269478\" aria-label=\"PubMed Central reference 55\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 55\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=High%20throughput%20ANI%20analysis%20of%2090K%20prokaryotic%20genomes%20reveals%20clear%20species%20boundaries&amp;journal=Nat%20Commun&amp;volume=9&amp;issue=1&amp;publication_year=2018&amp;author=Jain%2CC&amp;author=Rodriguez-R%2CLM&amp;author=Phillippy%2CAM&amp;author=Konstantinidis%2CKT&amp;author=Aluru%2CS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR56\">Jean M, Holland-Moritz H, Melvin AM, Johnstone JF, Mack MC. \u201cExperimental Assessment of Tree Canopy and Leaf Litter Controls on the Microbiome and Nitrogen Fixation Rates of Two Boreal Mosses.\u201d New Phytol. 2020;227(5):1335\u201349.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3cXhsFCju7bL\" aria-label=\"CAS reference 56\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=32299141\" aria-label=\"PubMed reference 56\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 56\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CExperimental%20Assessment%20of%20Tree%20Canopy%20and%20Leaf%20Litter%20Controls%20on%20the%20Microbiome%20and%20Nitrogen%20Fixation%20Rates%20of%20Two%20Boreal%20Mosses%E2%80%9D&amp;journal=New%20Phytol&amp;volume=227&amp;issue=5&amp;pages=1335-1349&amp;publication_year=2020&amp;author=Jean%2CM&amp;author=Holland-Moritz%2CH&amp;author=Melvin%2CAM&amp;author=Johnstone%2CJF&amp;author=Mack%2CMC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR57\">Jia Z, Davies PL. Antifreeze proteins: an unusual receptor-ligand interaction. Trends Biochem Sci. 2002;27(2):101\u20136.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD38XhtlGjur4%3D\" aria-label=\"CAS reference 57\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=11852248\" aria-label=\"PubMed reference 57\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 57\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Antifreeze%20proteins%3A%20an%20unusual%20receptor-ligand%20interaction&amp;journal=Trends%20Biochem%20Sci&amp;volume=27&amp;issue=2&amp;pages=101-106&amp;publication_year=2002&amp;author=Jia%2CZ&amp;author=Davies%2CPL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR58\">Joshi K, Kumar P, Kataria R. \u201cMicrobial Carotenoid Production and Their Potential Applications as Antioxidants: A Current Update.\u201d Process Biochemistry (Barking, London, England). 2023;128(May):190\u2013205.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXksFGrs7Y%3D\" aria-label=\"CAS reference 58\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 58\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CMicrobial%20Carotenoid%20Production%20and%20Their%20Potential%20Applications%20as%20Antioxidants%3A%20A%20Current%20Update%E2%80%9D&amp;journal=Process%20Biochemistry%20%28Barking%2C%20London%2C%20England%29&amp;volume=128&amp;issue=May&amp;pages=190-205&amp;publication_year=2023&amp;author=Joshi%2CK&amp;author=Kumar%2CP&amp;author=Kataria%2CR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR59\">Kang DD, Li F, Kirton E, Thomas A, Egan R, An H, et al. \u201cMetaBAT 2: An Adaptive Binning Algorithm for Robust and Efficient Genome Reconstruction from Metagenome Assemblies.\u201d PeerJ. 2019;7(July):e7359.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=31388474\" aria-label=\"PubMed reference 59\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6662567\" aria-label=\"PubMed Central reference 59\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 59\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CMetaBAT%202%3A%20An%20Adaptive%20Binning%20Algorithm%20for%20Robust%20and%20Efficient%20Genome%20Reconstruction%20from%20Metagenome%20Assemblies%E2%80%9D&amp;journal=PeerJ&amp;volume=7&amp;issue=July&amp;publication_year=2019&amp;author=Kang%2CDD&amp;author=Li%2CF&amp;author=Kirton%2CE&amp;author=Thomas%2CA&amp;author=Egan%2CR&amp;author=An%2CH&amp;author=Wang%2CZ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR60\">Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30(4):772.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3sXksFWisLc%3D\" aria-label=\"CAS reference 60\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23329690\" aria-label=\"PubMed reference 60\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3603318\" aria-label=\"PubMed Central reference 60\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 60\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=MAFFT%20multiple%20sequence%20alignment%20software%20version%207%3A%20improvements%20in%20performance%20and%20usability&amp;journal=Mol%20Biol%20Evol&amp;volume=30&amp;issue=4&amp;publication_year=2013&amp;author=Katoh%2CK&amp;author=Standley%2CDM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR61\">Kembel SW, O\u2019Connor TK, Arnold HK, Hubbell SP, Wright SJ, Green JL. \u201cRelationships between Phyllosphere Bacterial Communities and Plant Functional Traits in a Neotropical Forest.\u201d Proc Natl Acad Sci U S A. 2014;111(38):13715\u201320.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2cXhsFCitr7N\" aria-label=\"CAS reference 61\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=25225376\" aria-label=\"PubMed reference 61\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4183302\" aria-label=\"PubMed Central reference 61\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 61\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CRelationships%20between%20Phyllosphere%20Bacterial%20Communities%20and%20Plant%20Functional%20Traits%20in%20a%20Neotropical%20Forest%E2%80%9D&amp;journal=Proc%20Natl%20Acad%20Sci%20U%20S%20A&amp;volume=111&amp;issue=38&amp;pages=13715-13720&amp;publication_year=2014&amp;author=Kembel%2CSW&amp;author=O%E2%80%99Connor%2CTK&amp;author=Arnold%2CHK&amp;author=Hubbell%2CSP&amp;author=Wright%2CSJ&amp;author=Green%2CJL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR62\">Kopaczyk JM, Wargu\u0142a J, Jelonek T. The Variability of Terpenes in Conifers under Developmental and Environmental Stimuli. Environ Exp Bot. 2020;180(104197):104197.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3cXhslKhtrrM\" aria-label=\"CAS reference 62\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 62\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20Variability%20of%20Terpenes%20in%20Conifers%20under%20Developmental%20and%20Environmental%20Stimuli&amp;journal=Environ%20Exp%20Bot&amp;volume=180&amp;issue=104197&amp;publication_year=2020&amp;author=Kopaczyk%2CJM&amp;author=Wargu%C5%82a%2CJ&amp;author=Jelonek%2CT\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR63\">Koskella B, Meaden S. Understanding bacteriophage specificity in natural microbial communities. Viruses. 2013;5(3):806\u201323.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23478639\" aria-label=\"PubMed reference 63\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3705297\" aria-label=\"PubMed Central reference 63\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 63\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Understanding%20bacteriophage%20specificity%20in%20natural%20microbial%20communities&amp;journal=Viruses&amp;volume=5&amp;issue=3&amp;pages=806-823&amp;publication_year=2013&amp;author=Koskella%2CB&amp;author=Meaden%2CS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR64\">Kurtti TJ, Felsheim RF, Burkhardt NY, Oliver JD, Heu CC, Munderloh UG. \u201cRickettsia Buchneri Sp. Nov., a Rickettsial Endosymbiont of the Blacklegged Tick Ixodes Scapularis.\u201d Int J Syst Evol Microbiol. 2015;65(Pt 3):965\u201370.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2MXosFSksbk%3D\" aria-label=\"CAS reference 64\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=25563918\" aria-label=\"PubMed reference 64\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4365292\" aria-label=\"PubMed Central reference 64\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 64\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CRickettsia%20Buchneri%20Sp.%20Nov.%2C%20a%20Rickettsial%20Endosymbiont%20of%20the%20Blacklegged%20Tick%20Ixodes%20Scapularis%E2%80%9D&amp;journal=Int%20J%20Syst%20Evol%20Microbiol&amp;volume=65&amp;issue=Pt%203&amp;pages=965-970&amp;publication_year=2015&amp;author=Kurtti%2CTJ&amp;author=Felsheim%2CRF&amp;author=Burkhardt%2CNY&amp;author=Oliver%2CJD&amp;author=Heu%2CCC&amp;author=Munderloh%2CUG\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR65\">Ku Y-S, Wang Z, Duan S, Lam H-M. Rhizospheric communication through mobile genetic element transfers for the regulation of microbe-plant interactions. Biology. 2021;10(6):477.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXisFOmu77J\" aria-label=\"CAS reference 65\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=34071379\" aria-label=\"PubMed reference 65\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8227670\" aria-label=\"PubMed Central reference 65\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 65\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Rhizospheric%20communication%20through%20mobile%20genetic%20element%20transfers%20for%20the%20regulation%20of%20microbe-plant%20interactions&amp;journal=Biology&amp;volume=10&amp;issue=6&amp;publication_year=2021&amp;author=Ku%2CY-S&amp;author=Wang%2CZ&amp;author=Duan%2CS&amp;author=Lam%2CH-M\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR66\">Laforest-Lapointe I, Messier C, Kembel SW. \u201cHost Species Identity, Site and Time Drive Temperate Tree Phyllosphere Bacterial Community Structure.\u201d Microbiome. 2016;4(1):1\u201310.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 66\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CHost%20Species%20Identity%2C%20Site%20and%20Time%20Drive%20Temperate%20Tree%20Phyllosphere%20Bacterial%20Community%20Structure%E2%80%9D&amp;journal=Microbiome&amp;volume=4&amp;issue=1&amp;pages=1-10&amp;publication_year=2016&amp;author=Laforest-Lapointe%2CI&amp;author=Messier%2CC&amp;author=Kembel%2CSW\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR67\">Lawley TD, Klimke WA, Gubbins MJ, Frost LS. F factor conjugation is a true type IV secretion system. FEMS Microbiol Lett. 2003;224(1):1\u201315.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD3sXlt1egt74%3D\" aria-label=\"CAS reference 67\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=12855161\" aria-label=\"PubMed reference 67\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 67\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=F%20factor%20conjugation%20is%20a%20true%20type%20IV%20secretion%20system&amp;journal=FEMS%20Microbiol%20Lett&amp;volume=224&amp;issue=1&amp;pages=1-15&amp;publication_year=2003&amp;author=Lawley%2CTD&amp;author=Klimke%2CWA&amp;author=Gubbins%2CMJ&amp;author=Frost%2CLS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR68\">Lee K-Y, Morgan XC, Dunfield PF, Tamas I, McDonald IR, Stott MB. Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes. ISME J. 2014;8(7):1522\u201333.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2cXhtVKmtrnM\" aria-label=\"CAS reference 68\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=24477196\" aria-label=\"PubMed reference 68\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4069393\" aria-label=\"PubMed Central reference 68\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 68\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Genomic%20analysis%20of%20Chthonomonas%20calidirosea%2C%20the%20first%20sequenced%20isolate%20of%20the%20phylum%20Armatimonadetes&amp;journal=ISME%20J&amp;volume=8&amp;issue=7&amp;pages=1522-1533&amp;publication_year=2014&amp;author=Lee%2CK-Y&amp;author=Morgan%2CXC&amp;author=Dunfield%2CPF&amp;author=Tamas%2CI&amp;author=McDonald%2CIR&amp;author=Stott%2CMB\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR69\">Le S, He X, Tan Y, Huang G, Zhang L, Lux R, et al. Mapping the tail fiber as the receptor binding protein responsible for differential host specificity of Pseudomonas aeruginosa bacteriophages PaP1 and JG004. PLoS ONE. 2013;8(7):e68562.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3sXhtFyis7zJ\" aria-label=\"CAS reference 69\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23874674\" aria-label=\"PubMed reference 69\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3706319\" aria-label=\"PubMed Central reference 69\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 69\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Mapping%20the%20tail%20fiber%20as%20the%20receptor%20binding%20protein%20responsible%20for%20differential%20host%20specificity%20of%20Pseudomonas%20aeruginosa%20bacteriophages%20PaP1%20and%20JG004&amp;journal=PLoS%20ONE&amp;volume=8&amp;issue=7&amp;publication_year=2013&amp;author=Le%2CS&amp;author=He%2CX&amp;author=Tan%2CY&amp;author=Huang%2CG&amp;author=Zhang%2CL&amp;author=Lux%2CR&amp;author=Shi%2CW&amp;author=Hu%2CF\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR70\">Leveau JH, Lindow SE. \u201cAppetite of an Epiphyte: Quantitative Monitoring of Bacterial Sugar Consumption in the Phyllosphere.\u201d Proc Natl Acad Sci U S A. 2001;98(6):3446\u201353.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD3MXit1alur8%3D\" aria-label=\"CAS reference 70\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=11248098\" aria-label=\"PubMed reference 70\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC30673\" aria-label=\"PubMed Central reference 70\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 70\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CAppetite%20of%20an%20Epiphyte%3A%20Quantitative%20Monitoring%20of%20Bacterial%20Sugar%20Consumption%20in%20the%20Phyllosphere%E2%80%9D&amp;journal=Proc%20Natl%20Acad%20Sci%20U%20S%20A&amp;volume=98&amp;issue=6&amp;pages=3446-3453&amp;publication_year=2001&amp;author=Leveau%2CJH&amp;author=Lindow%2CSE\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR71\">Levy A, Gonzalez\u00a0Salas I, Mittelviefhaus M, Clingenpeel S, Herrera Paredes S, Miao J, Wang K, et al. Genomic features of bacterial adaptation to plants.\u00a0Nat Genet. 2017;50(1):138\u201350.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR72\">Li F, Zi H, Sonne C, Li X. \u201cMicrobiome Sustains Forest Ecosystem Functions across Hierarchical Scales.\u201d Eco-Environment &amp; Health. 2023;2(1):24\u201331.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 72\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CMicrobiome%20Sustains%20Forest%20Ecosystem%20Functions%20across%20Hierarchical%20Scales%E2%80%9D&amp;journal=Eco-Environment%20%26%20Health&amp;volume=2&amp;issue=1&amp;pages=24-31&amp;publication_year=2023&amp;author=Li%2CF&amp;author=Zi%2CH&amp;author=Sonne%2CC&amp;author=Li%2CX\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR73\">Li H. BFC: correcting Illumina sequencing errors. Bioinformatics. 2015;31(17):2885\u20137.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC28Xhs1Gisb3M\" aria-label=\"CAS reference 73\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=25953801\" aria-label=\"PubMed reference 73\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4635656\" aria-label=\"PubMed Central reference 73\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 73\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=BFC%3A%20correcting%20Illumina%20sequencing%20errors&amp;journal=Bioinformatics&amp;volume=31&amp;issue=17&amp;pages=2885-2887&amp;publication_year=2015&amp;author=Li%2CH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR74\">Li M, Hong L, Ye W, Wang Z, Shen H. Phyllosphere bacterial and fungal communities vary with host species identity, plant traits and seasonality in a subtropical forest. Environ Microbiome. 2022;17(1):29.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB2MXht1KmtrfK\" aria-label=\"CAS reference 74\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35681245\" aria-label=\"PubMed reference 74\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9185928\" aria-label=\"PubMed Central reference 74\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 74\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Phyllosphere%20bacterial%20and%20fungal%20communities%20vary%20with%20host%20species%20identity%2C%20plant%20traits%20and%20seasonality%20in%20a%20subtropical%20forest&amp;journal=Environ%20Microbiome&amp;volume=17&amp;issue=1&amp;publication_year=2022&amp;author=Li%2CM&amp;author=Hong%2CL&amp;author=Ye%2CW&amp;author=Wang%2CZ&amp;author=Shen%2CH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR75\">Lindow SE, Brandl MT. Microbiology of the phyllosphere. Appl Environ Microbiol. 2003;69(4):1875.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD3sXivFKrur8%3D\" aria-label=\"CAS reference 75\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=12676659\" aria-label=\"PubMed reference 75\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC154815\" aria-label=\"PubMed Central reference 75\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 75\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Microbiology%20of%20the%20phyllosphere&amp;journal=Appl%20Environ%20Microbiol&amp;volume=69&amp;issue=4&amp;publication_year=2003&amp;author=Lindow%2CSE&amp;author=Brandl%2CMT\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR76\">Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006;22(13):1658\u20139.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD28XmsVent7s%3D\" aria-label=\"CAS reference 76\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=16731699\" aria-label=\"PubMed reference 76\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 76\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Cd-hit%3A%20a%20fast%20program%20for%20clustering%20and%20comparing%20large%20sets%20of%20protein%20or%20nucleotide%20sequences&amp;journal=Bioinformatics&amp;volume=22&amp;issue=13&amp;pages=1658-1659&amp;publication_year=2006&amp;author=Li%2CW&amp;author=Godzik%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR77\">Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B. The Carbohydrate-Active Enzymes Database (CAZy) in 2013.\u00a0Nucleic Acids Res. 2014;42(Database issue):D490\u201395.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR78\">Lomsadze A, Gemayel K, Tang S, Borodovsky M. Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes. Genome Res. 2018;28(7):1079\u201389.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1cXhsFegsL7F\" aria-label=\"CAS reference 78\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29773659\" aria-label=\"PubMed reference 78\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6028130\" aria-label=\"PubMed Central reference 78\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 78\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Modeling%20leaderless%20transcription%20and%20atypical%20genes%20results%20in%20more%20accurate%20gene%20prediction%20in%20prokaryotes&amp;journal=Genome%20Res&amp;volume=28&amp;issue=7&amp;pages=1079-1089&amp;publication_year=2018&amp;author=Lomsadze%2CA&amp;author=Gemayel%2CK&amp;author=Tang%2CS&amp;author=Borodovsky%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR79\">Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15(12):550.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=25516281\" aria-label=\"PubMed reference 79\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4302049\" aria-label=\"PubMed Central reference 79\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 79\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Moderated%20estimation%20of%20fold%20change%20and%20dispersion%20for%20RNA-seq%20data%20with%20DESeq2&amp;journal=Genome%20Biol&amp;volume=15&amp;issue=12&amp;publication_year=2014&amp;author=Love%2CMI&amp;author=Huber%2CW&amp;author=Anders%2CS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR80\">Low WW, Wong JLC, Beltran LC, Seddon C, David S, Kwong H-S, et al. Mating pair stabilization mediates bacterial conjugation species specificity. Nat Microbiol. 2022;7(7):1016\u201327.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB38XhsFaksbbJ\" aria-label=\"CAS reference 80\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35697796\" aria-label=\"PubMed reference 80\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9246713\" aria-label=\"PubMed Central reference 80\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 80\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Mating%20pair%20stabilization%20mediates%20bacterial%20conjugation%20species%20specificity&amp;journal=Nat%20Microbiol&amp;volume=7&amp;issue=7&amp;pages=1016-1027&amp;publication_year=2022&amp;author=Low%2CWW&amp;author=Wong%2CJLC&amp;author=Beltran%2CLC&amp;author=Seddon%2CC&amp;author=David%2CS&amp;author=Kwong%2CH-S&amp;author=Bizeau%2CT\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR81\">Meyer KM, Porch R, Muscettola IE, Vasconcelos ALS, Sherman JK, Metcalf CJE, et al. Plant neighborhood shapes diversity and reduces interspecific variation of the phyllosphere microbiome. ISME J. 2022. <a href=\"https:\/\/doi.org\/10.1038\/s41396-021-01184-6\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1038\/s41396-021-01184-6\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1038\/s41396-021-01184-6<\/a>.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/s41396-021-01184-6\" data-track-item_id=\"10.1038\/s41396-021-01184-6\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fs41396-021-01184-6\" aria-label=\"Article reference 81\" data-doi=\"10.1038\/s41396-021-01184-6\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=36357782\" aria-label=\"PubMed reference 81\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC9860033\" aria-label=\"PubMed Central reference 81\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 81\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Plant%20neighborhood%20shapes%20diversity%20and%20reduces%20interspecific%20variation%20of%20the%20phyllosphere%20microbiome&amp;journal=ISME%20J&amp;doi=10.1038%2Fs41396-021-01184-6&amp;publication_year=2022&amp;author=Meyer%2CKM&amp;author=Porch%2CR&amp;author=Muscettola%2CIE&amp;author=Vasconcelos%2CALS&amp;author=Sherman%2CJK&amp;author=Metcalf%2CCJE&amp;author=Lindow%2CSE&amp;author=Koskella%2CB\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR82\">Mistry J, Finn RD, Eddy SR, Bateman A, Punta M. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic Acids Res. 2013;41(12):e121.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3sXhtValtrzI\" aria-label=\"CAS reference 82\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23598997\" aria-label=\"PubMed reference 82\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3695513\" aria-label=\"PubMed Central reference 82\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 82\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Challenges%20in%20homology%20search%3A%20HMMER3%20and%20convergent%20evolution%20of%20coiled-coil%20regions&amp;journal=Nucleic%20Acids%20Res&amp;volume=41&amp;issue=12&amp;publication_year=2013&amp;author=Mistry%2CJ&amp;author=Finn%2CRD&amp;author=Eddy%2CSR&amp;author=Bateman%2CA&amp;author=Punta%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR83\">Mohr KI, Moradi A, Glaeser SP, K\u00e4mpfer P, Gemperlein K, N\u00fcbel U, et al. Nannocystis konarekensis Sp. Nov., a novel myxobacterium from an Iranian desert. Int J Syst Evol Microbiol. 2018;68(3):721\u20139.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXhsFWjsL7K\" aria-label=\"CAS reference 83\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29458458\" aria-label=\"PubMed reference 83\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 83\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Nannocystis%20konarekensis%20Sp.%20Nov.%2C%20a%20novel%20myxobacterium%20from%20an%20Iranian%20desert&amp;journal=Int%20J%20Syst%20Evol%20Microbiol&amp;volume=68&amp;issue=3&amp;pages=721-729&amp;publication_year=2018&amp;author=Mohr%2CKI&amp;author=Moradi%2CA&amp;author=Glaeser%2CSP&amp;author=K%C3%A4mpfer%2CP&amp;author=Gemperlein%2CK&amp;author=N%C3%BCbel%2CU&amp;author=Schumann%2CP&amp;author=M%C3%BCller%2CR&amp;author=Wink%2CJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR84\">Moyes AB, Kueppers LM, Pett-Ridge J, Carper DL, Vandehey N, O\u2019Neil J, Frank AC. Evidence for Foliar Endophytic Nitrogen Fixation in a Widely Distributed Subalpine Conifer. New Phytol.\u00a02016;210(2). <a href=\"https:\/\/doi.org\/10.1111\/nph.13850\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1111\/nph.13850\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1111\/nph.13850<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR85\">M\u00fcller DB, Vogel C, Bai Y, Vorholt JA. The plant microbiota: systems-level insights and perspectives. Annu Rev Genet. 2016;50(1):211\u201334.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=27648643\" aria-label=\"PubMed reference 85\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 85\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20plant%20microbiota%3A%20systems-level%20insights%20and%20perspectives&amp;journal=Annu%20Rev%20Genet&amp;volume=50&amp;issue=1&amp;pages=211-234&amp;publication_year=2016&amp;author=M%C3%BCller%2CDB&amp;author=Vogel%2CC&amp;author=Bai%2CY&amp;author=Vorholt%2CJA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR86\">Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, et al. Rfam 12.0: Updates to the RNA Families Database. Nucleic Acids Res. 2015;43 (Database issue):D130.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR87\">Nawrocki EP, Eddy SR. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics. 2013;29(22):2933.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3sXhslWnsb7N\" aria-label=\"CAS reference 87\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=24008419\" aria-label=\"PubMed reference 87\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3810854\" aria-label=\"PubMed Central reference 87\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 87\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Infernal%201.1%3A%20100-fold%20faster%20RNA%20homology%20searches&amp;journal=Bioinformatics&amp;volume=29&amp;issue=22&amp;publication_year=2013&amp;author=Nawrocki%2CEP&amp;author=Eddy%2CSR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR88\">Nayfach S, Camargo AP, Schulz F, Eloe-Fadrosh E, Roux S, Kyrpides NC. CheckV Assesses the Quality and Completeness of Metagenome-Assembled Viral Genomes.\u00a0Nat Biotechnol. 2020;39(5):578\u201385.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR89\">Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ. Iq-tree: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2015;32(1):268\u201374.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC2MXivFGltrs%3D\" aria-label=\"CAS reference 89\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=25371430\" aria-label=\"PubMed reference 89\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 89\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Iq-tree%3A%20a%20fast%20and%20effective%20stochastic%20algorithm%20for%20estimating%20maximum-likelihood%20phylogenies&amp;journal=Mol%20Biol%20Evol&amp;volume=32&amp;issue=1&amp;pages=268-274&amp;publication_year=2015&amp;author=Nguyen%2CL-T&amp;author=Schmidt%2CHA&amp;author=Haeseler%2CA&amp;author=Minh%2CBQ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR90\">Nies DH. The cobalt, zinc, and cadmium efflux system CzcABC from Alcaligenes eutrophus functions as a cation-proton antiporter in Escherichia coli. J Bacteriol. 1995;177(10):2707\u201312.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DyaK2MXls1Slu7w%3D\" aria-label=\"CAS reference 90\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=7751279\" aria-label=\"PubMed reference 90\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC176940\" aria-label=\"PubMed Central reference 90\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 90\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20cobalt%2C%20zinc%2C%20and%20cadmium%20efflux%20system%20CzcABC%20from%20Alcaligenes%20eutrophus%20functions%20as%20a%20cation-proton%20antiporter%20in%20Escherichia%20coli&amp;journal=J%20Bacteriol&amp;volume=177&amp;issue=10&amp;pages=2707-2712&amp;publication_year=1995&amp;author=Nies%2CDH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR91\">Nurk S, Meleshko D, Korobeynikov A, Pevzner PA. metaSPAdes: a new versatile metagenomic assembler. Genome Res. 2017;27(5):824\u201334. <a href=\"https:\/\/doi.org\/10.1101\/gr.213959.116\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1101\/gr.213959.116\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1101\/gr.213959.116<\/a>. Epub 2017 Mar 15. PMID: 28298430; PMCID: PMC5411777.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR92\">Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, et al. The Norway spruce genome sequence and conifer genome evolution. Nature. 2013;497(7451):579\u201384.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3sXotFSns7g%3D\" aria-label=\"CAS reference 92\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23698360\" aria-label=\"PubMed reference 92\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 92\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20Norway%20spruce%20genome%20sequence%20and%20conifer%20genome%20evolution&amp;journal=Nature&amp;volume=497&amp;issue=7451&amp;pages=579-584&amp;publication_year=2013&amp;author=Nystedt%2CB&amp;author=Street%2CNR&amp;author=Wetterbom%2CA&amp;author=Zuccolo%2CA&amp;author=Lin%2CYC&amp;author=Scofield%2CDG&amp;author=Vezzi%2CF\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR93\">Oksanen J. Vegan : Community Ecology Package.\u00a02010.\u00a0<a href=\"https:\/\/vegan.r-Forge.r-Project.org\/\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"https:\/\/vegan.r-Forge.r-Project.org\/\" rel=\"nofollow noopener\" target=\"_blank\">http:\/\/vegan.r-Forge.r-Project.org\/<\/a><br \/>\n, <a href=\"https:\/\/cir.nii.ac.jp\/crid\/1570291225091856896\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"https:\/\/cir.nii.ac.jp\/crid\/1570291225091856896\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/cir.nii.ac.jp\/crid\/1570291225091856896<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR94\">Oksanen J, Simpson GL, Blanchet FG, Kindt R, Legendre P, Minchin PR, O\u2019Hara RB, et al. Vegan: Community Ecology Package.\u00a02025.\u00a0<a href=\"https:\/\/CRAN.R-project.org\/package=vegan\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"https:\/\/CRAN.R-project.org\/package=vegan\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/CRAN.R-project.org\/package=vegan<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR95\">Oliveira PH, Touchon M, Cury J, Rocha EPC. The chromosomal organization of horizontal gene transfer in bacteria. Nat Commun. 2017;8(1):841.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29018197\" aria-label=\"PubMed reference 95\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5635113\" aria-label=\"PubMed Central reference 95\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 95\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20chromosomal%20organization%20of%20horizontal%20gene%20transfer%20in%20bacteria&amp;journal=Nat%20Commun&amp;volume=8&amp;issue=1&amp;publication_year=2017&amp;author=Oliveira%2CPH&amp;author=Touchon%2CM&amp;author=Cury%2CJ&amp;author=Rocha%2CEPC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR96\">Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, et al. \u201cMash: Fast Genome and Metagenome Distance Estimation Using MinHash.\u201d Genome Biol. 2016;17(1):1\u201314.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 96\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CMash%3A%20Fast%20Genome%20and%20Metagenome%20Distance%20Estimation%20Using%20MinHash%E2%80%9D&amp;journal=Genome%20Biol&amp;volume=17&amp;issue=1&amp;pages=1-14&amp;publication_year=2016&amp;author=Ondov%2CBD&amp;author=Treangen%2CTJ&amp;author=Melsted%2CP&amp;author=Mallonee%2CAB&amp;author=Bergman%2CNH&amp;author=Koren%2CS&amp;author=Phillippy%2CAM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR97\">Pan Y, Birdsey RA, Fang J, Houghton R, Kauppi PE, Kurz WA, et al. A large and persistent carbon sink in the world\u2019s forests. Science (New York, NY). 2011;333(6045):988\u201393.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3MXhtVWrtr%2FE\" aria-label=\"CAS reference 97\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 97\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=A%20large%20and%20persistent%20carbon%20sink%20in%20the%20world%E2%80%99s%20forests&amp;journal=Science%20%28New%20York%2C%20NY%29&amp;volume=333&amp;issue=6045&amp;pages=988-993&amp;publication_year=2011&amp;author=Pan%2CY&amp;author=Birdsey%2CRA&amp;author=Fang%2CJ&amp;author=Houghton%2CR&amp;author=Kauppi%2CPE&amp;author=Kurz%2CWA&amp;author=Phillips%2COL\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR98\">Passel MWJV, Marri PR, Ochman H. The emergence and fate of horizontally acquired genes in Escherichia coli. PLoS Comput Biol. 2008;4(4):e1000059.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=18404206\" aria-label=\"PubMed reference 98\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC2275313\" aria-label=\"PubMed Central reference 98\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 98\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20emergence%20and%20fate%20of%20horizontally%20acquired%20genes%20in%20Escherichia%20coli&amp;journal=PLoS%20Comput%20Biol&amp;volume=4&amp;issue=4&amp;publication_year=2008&amp;author=Passel%2CMWJV&amp;author=Marri%2CPR&amp;author=Ochman%2CH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR99\">Pimentel D, Harvey C, Resosudarmo P, Sinclair K, Kurz D, McNair M, et al. \u201cEnvironmental and Economic Costs of Soil Erosion and Conservation Benefits.\u201d Science. 1995;267(5201):1117\u201323.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DyaK2MXktVKjsL4%3D\" aria-label=\"CAS reference 99\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=17789193\" aria-label=\"PubMed reference 99\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 99\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CEnvironmental%20and%20Economic%20Costs%20of%20Soil%20Erosion%20and%20Conservation%20Benefits%E2%80%9D&amp;journal=Science&amp;volume=267&amp;issue=5201&amp;pages=1117-1123&amp;publication_year=1995&amp;author=Pimentel%2CD&amp;author=Harvey%2CC&amp;author=Resosudarmo%2CP&amp;author=Sinclair%2CK&amp;author=Kurz%2CD&amp;author=McNair%2CM&amp;author=Crist%2CS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR100\">Potter SC, Luciani A, Eddy SR, Park Y, Lopez R, Finn RD. HMMER web server: 2018 update. Nucleic Acids Res. 2018;46(W1):W200-204.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXosVyrsrc%3D\" aria-label=\"CAS reference 100\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29905871\" aria-label=\"PubMed reference 100\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6030962\" aria-label=\"PubMed Central reference 100\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 100\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=HMMER%20web%20server%3A%202018%20update&amp;journal=Nucleic%20Acids%20Res&amp;volume=46&amp;issue=W1&amp;pages=W200-204&amp;publication_year=2018&amp;author=Potter%2CSC&amp;author=Luciani%2CA&amp;author=Eddy%2CSR&amp;author=Park%2CY&amp;author=Lopez%2CR&amp;author=Finn%2CRD\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR101\">Putkinen A, Siljanen HMP, Laihonen A, Paasisalo I, Porkka K, Tiirola M, et al. New insight to the role of microbes in the methane exchange in trees: evidence from metagenomic sequencing. New Phytol. 2021;231(2):524\u201336.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXhslKhtr%2FM\" aria-label=\"CAS reference 101\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=33780002\" aria-label=\"PubMed reference 101\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 101\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=New%20insight%20to%20the%20role%20of%20microbes%20in%20the%20methane%20exchange%20in%20trees%3A%20evidence%20from%20metagenomic%20sequencing&amp;journal=New%20Phytol&amp;volume=231&amp;issue=2&amp;pages=524-536&amp;publication_year=2021&amp;author=Putkinen%2CA&amp;author=Siljanen%2CHMP&amp;author=Laihonen%2CA&amp;author=Paasisalo%2CI&amp;author=Porkka%2CK&amp;author=Tiirola%2CM&amp;author=Haikarainen%2CI&amp;author=Tenhovirta%2CS&amp;author=Pihlatie%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR102\">Ramos JL, Mart\u00ednez-Bueno M, Molina-Henares AJ, Ter\u00e1n W, Watanabe K, Zhang X, et al. The TetR Family of Transcriptional Repressors. Microbiol Mol Biol Rev. 2005;69(2):326\u201356.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD2MXmtFartro%3D\" aria-label=\"CAS reference 102\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=15944459\" aria-label=\"PubMed reference 102\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC1197418\" aria-label=\"PubMed Central reference 102\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 102\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20TetR%20Family%20of%20Transcriptional%20Repressors&amp;journal=Microbiol%20Mol%20Biol%20Rev&amp;volume=69&amp;issue=2&amp;pages=326-356&amp;publication_year=2005&amp;author=Ramos%2CJL&amp;author=Mart%C3%ADnez-Bueno%2CM&amp;author=Molina-Henares%2CAJ&amp;author=Ter%C3%A1n%2CW&amp;author=Watanabe%2CK&amp;author=Zhang%2CX&amp;author=Gallegos%2CMT&amp;author=Brennan%2CR&amp;author=Tobes%2CR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR103\">R Core Team. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.\u00a02024.\u00a0<a href=\"https:\/\/www.R-project.org\/\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"https:\/\/www.R-project.org\/\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/www.R-project.org\/<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR104\">Redford AJ, Bowers RM, Knight R, Linhart Y, Fierer N. The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves. Environ Microbiol. 2010;12(11):2885\u201393.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=20545741\" aria-label=\"PubMed reference 104\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3156554\" aria-label=\"PubMed Central reference 104\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 104\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20ecology%20of%20the%20phyllosphere%3A%20geographic%20and%20phylogenetic%20variability%20in%20the%20distribution%20of%20bacteria%20on%20tree%20leaves&amp;journal=Environ%20Microbiol&amp;volume=12&amp;issue=11&amp;pages=2885-2893&amp;publication_year=2010&amp;author=Redford%2CAJ&amp;author=Bowers%2CRM&amp;author=Knight%2CR&amp;author=Linhart%2CY&amp;author=Fierer%2CN\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR105\">Riley R, Bowers RM, Camargo AP, Campbell A, Egan R, Eloe-Fadrosh EA, et al. Terabase-scale coassembly of a tropical soil microbiome. Microbiol Spectr. 2023;11(4):e00200\u201323. <a href=\"https:\/\/doi.org\/10.1128\/spectrum.00200-23\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1128\/spectrum.00200-23\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1128\/spectrum.00200-23<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR106\">Roberson EB, Firestone MK. Relationship between desiccation and exopolysaccharide production in a soil Pseudomonas sp. Appl Environ Microbiol. 1992;58(4):1284\u201391.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DyaK38XitFWjtbk%3D\" aria-label=\"CAS reference 106\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=16348695\" aria-label=\"PubMed reference 106\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC195588\" aria-label=\"PubMed Central reference 106\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 106\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Relationship%20between%20desiccation%20and%20exopolysaccharide%20production%20in%20a%20soil%20Pseudomonas%20sp&amp;journal=Appl%20Environ%20Microbiol&amp;volume=58&amp;issue=4&amp;pages=1284-1291&amp;publication_year=1992&amp;author=Roberson%2CEB&amp;author=Firestone%2CMK\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR107\">Rodr\u00edguez-Rodr\u00edguez JC, Bergeron Y, Kembel SW, Fenton NJ. Dominance of coniferous and broadleaved trees drives bacterial associations with boreal feather mosses. Environ Microbiol. 2022;24(8):3517\u201328.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=35416394\" aria-label=\"PubMed reference 107\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 107\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Dominance%20of%20coniferous%20and%20broadleaved%20trees%20drives%20bacterial%20associations%20with%20boreal%20feather%20mosses&amp;journal=Environ%20Microbiol&amp;volume=24&amp;issue=8&amp;pages=3517-3528&amp;publication_year=2022&amp;author=Rodr%C3%ADguez-Rodr%C3%ADguez%2CJC&amp;author=Bergeron%2CY&amp;author=Kembel%2CSW&amp;author=Fenton%2CNJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR108\">Rodriguez-Valera F, Martin-Cuadrado A-B, Rodriguez-Brito B, Lejla Pa\u0161i\u0107 T, Thingstad F, Rohwer F, et al. Explaining Microbial Population Genomics through Phage Predation. Nat Rev Microbiol. 2009;7(11):828\u201336.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BD1MXht1Kqsb7K\" aria-label=\"CAS reference 108\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=19834481\" aria-label=\"PubMed reference 108\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 108\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Explaining%20Microbial%20Population%20Genomics%20through%20Phage%20Predation&amp;journal=Nat%20Rev%20Microbiol&amp;volume=7&amp;issue=11&amp;pages=828-836&amp;publication_year=2009&amp;author=Rodriguez-Valera%2CF&amp;author=Martin-Cuadrado%2CA-B&amp;author=Rodriguez-Brito%2CB&amp;author=Lejla%20Pa%C5%A1i%C4%87%2CT&amp;author=Thingstad%2CF&amp;author=Rohwer%2CF&amp;author=Mira%2CA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR109\">Rousk K, Jones DL, DeLuca TH. Moss-Cyanobacteria Associations as Biogenic Sources of Nitrogen in Boreal Forest Ecosystems.\u00a0Front Microbiol. 2013;4. <a href=\"https:\/\/doi.org\/10.3389\/fmicb.2013.00150\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.3389\/fmicb.2013.00150\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.3389\/fmicb.2013.00150<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR110\">Roux S, Camargo AP, Coutinho FH, Dabdoub SM, Dutilh BE, Nayfach S, Tritt A. iPHoP: An Integrated Machine-Learning Framework to Maximize Host Prediction for Metagenome-Assembled Virus Genomes.\u00a0bioRxiv.\u00a02022.\u00a0<a href=\"https:\/\/doi.org\/10.1101\/2022.07.28.501908\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1101\/2022.07.28.501908\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1101\/2022.07.28.501908<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR111\">Roux S, Camargo AP, Coutinho FH, Dabdoub SM, Dutilh BE, Nayfach S, Tritt A. iPHoP: An Integrated Machine Learning Framework to Maximize Host Prediction for Metagenome-Derived Viruses of Archaea and Bacteria. PLoS Biol. 2023;21(4):e3002083.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR112\">Saak CC, Dinh CB, Dutton RJ. Experimental approaches to tracking mobile genetic elements in microbial communities. FEMS Microbiol Rev. 2020;44(5):606\u201330.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3MXhtlWgtbvN\" aria-label=\"CAS reference 112\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=32672812\" aria-label=\"PubMed reference 112\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7476777\" aria-label=\"PubMed Central reference 112\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 112\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Experimental%20approaches%20to%20tracking%20mobile%20genetic%20elements%20in%20microbial%20communities&amp;journal=FEMS%20Microbiol%20Rev&amp;volume=44&amp;issue=5&amp;pages=606-630&amp;publication_year=2020&amp;author=Saak%2CCC&amp;author=Dinh%2CCB&amp;author=Dutton%2CRJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR113\">Saary P, Mitchell AL, Finn RD. Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC. Genome Biol. 2020;21(1):244.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=32912302\" aria-label=\"PubMed reference 113\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7488429\" aria-label=\"PubMed Central reference 113\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 113\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Estimating%20the%20quality%20of%20eukaryotic%20genomes%20recovered%20from%20metagenomic%20analysis%20with%20EukCC&amp;journal=Genome%20Biol&amp;volume=21&amp;issue=1&amp;publication_year=2020&amp;author=Saary%2CP&amp;author=Mitchell%2CAL&amp;author=Finn%2CRD\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR114\">Saraiva JP, Bartholom\u00e4us A, Toscan RB, Baldrian P, da Rocha UN. \u201cRecovery of 197 Eukaryotic Bins Reveals Major Challenges for Eukaryote Genome Reconstruction from Terrestrial Metagenomes.\u201d Mol Ecol Resour. 2023;23(5):1066\u201376.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXlvFyjt74%3D\" aria-label=\"CAS reference 114\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=36847735\" aria-label=\"PubMed reference 114\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 114\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CRecovery%20of%20197%20Eukaryotic%20Bins%20Reveals%20Major%20Challenges%20for%20Eukaryote%20Genome%20Reconstruction%20from%20Terrestrial%20Metagenomes%E2%80%9D&amp;journal=Mol%20Ecol%20Resour&amp;volume=23&amp;issue=5&amp;pages=1066-1076&amp;publication_year=2023&amp;author=Saraiva%2CJP&amp;author=Bartholom%C3%A4us%2CA&amp;author=Toscan%2CRB&amp;author=Baldrian%2CP&amp;author=Rocha%2CUN\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR115\">Seidl R, Thom D, Kautz M, Martin-Benito D, Peltoniemi M, Vacchiano G, et al. Forest disturbances under climate change. Nat Clim Change. 2017;7(6):395\u2013402.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 115\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Forest%20disturbances%20under%20climate%20change&amp;journal=Nat%20Clim%20Change&amp;volume=7&amp;issue=6&amp;pages=395-402&amp;publication_year=2017&amp;author=Seidl%2CR&amp;author=Thom%2CD&amp;author=Kautz%2CM&amp;author=Martin-Benito%2CD&amp;author=Peltoniemi%2CM&amp;author=Vacchiano%2CG&amp;author=Wild%2CJ\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR116\">Seppey M, Manni M, Zdobnov EM. BUSCO: Assessing Genome Assembly and Annotation Completeness. In Methods in Molecular Biology, 2019;1962:227\u201345. Humana Press Inc.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR117\">Shaw J, Yu YW. Fast and robust metagenomic sequence comparison through sparse chaining with Skani. Nat Methods. 2023;20(11):1661\u20135.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB3sXhvFOltbzM\" aria-label=\"CAS reference 117\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=37735570\" aria-label=\"PubMed reference 117\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC10630134\" aria-label=\"PubMed Central reference 117\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 117\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Fast%20and%20robust%20metagenomic%20sequence%20comparison%20through%20sparse%20chaining%20with%20Skani&amp;journal=Nat%20Methods&amp;volume=20&amp;issue=11&amp;pages=1661-1665&amp;publication_year=2023&amp;author=Shaw%2CJ&amp;author=Yu%2CYW\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR118\">Shkoporov AN, Hill C. Bacteriophages of the Human Gut: The \u2018Known Unknown\u2019 of the Microbiome. Cell Host Microbe. 2019;25(2):195\u2013209.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXjtVWns70%3D\" aria-label=\"CAS reference 118\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=30763534\" aria-label=\"PubMed reference 118\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 118\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Bacteriophages%20of%20the%20Human%20Gut%3A%20The%20%E2%80%98Known%20Unknown%E2%80%99%20of%20the%20Microbiome&amp;journal=Cell%20Host%20Microbe&amp;volume=25&amp;issue=2&amp;pages=195-209&amp;publication_year=2019&amp;author=Shkoporov%2CAN&amp;author=Hill%2CC\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR119\">Song W, Wemheuer B, Zhang S, Steensen K, Thomas T. MetaCHIP: Community-Level Horizontal Gene Transfer Identification through the Combination of Best-Match and Phylogenetic Approaches. Microbiome. 2019;7(1). <a href=\"https:\/\/doi.org\/10.1186\/s40168-019-0649-y\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1186\/s40168-019-0649-y\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1186\/s40168-019-0649-y<\/a>.<\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR120\">Takeda K. Characteristics of a nitrogen-fixing methanotroph, Methylocystis T-1. Antonie Van Leeuwenhoek. 1988;54(6):521\u201334.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:STN:280:DyaL1M7msFaruw%3D%3D\" aria-label=\"CAS reference 120\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=3148292\" aria-label=\"PubMed reference 120\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 120\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Characteristics%20of%20a%20nitrogen-fixing%20methanotroph%2C%20Methylocystis%20T-1&amp;journal=Antonie%20Van%20Leeuwenhoek&amp;volume=54&amp;issue=6&amp;pages=521-534&amp;publication_year=1988&amp;author=Takeda%2CK\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR121\">Tatum LA. \u201cThe Southern Corn Leaf Blight Epidemic: A New Race of the Fungus Helminthosporium Maydis Threatens Domestic Prices and Corn Reserves for Export.\u201d Science. 1971;171(3976):1113\u20136.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:STN:280:DC%2BC3cvgs1yluw%3D%3D\" aria-label=\"CAS reference 121\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=17777595\" aria-label=\"PubMed reference 121\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 121\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CThe%20Southern%20Corn%20Leaf%20Blight%20Epidemic%3A%20A%20New%20Race%20of%20the%20Fungus%20Helminthosporium%20Maydis%20Threatens%20Domestic%20Prices%20and%20Corn%20Reserves%20for%20Export%E2%80%9D&amp;journal=Science&amp;volume=171&amp;issue=3976&amp;pages=1113-1116&amp;publication_year=1971&amp;author=Tatum%2CLA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR122\">Vacher C, Hampe A, Port\u00e9 AJ, Sauer U, Compant S, Morris CE. The Phyllosphere: Microbial Jungle at the Plant\u2013climate Interface. Annu Rev Ecol Evol Syst. 2016;47(1):1\u201324.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 122\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=The%20Phyllosphere%3A%20Microbial%20Jungle%20at%20the%20Plant%E2%80%93climate%20Interface&amp;journal=Annu%20Rev%20Ecol%20Evol%20Syst&amp;volume=47&amp;issue=1&amp;pages=1-24&amp;publication_year=2016&amp;author=Vacher%2CC&amp;author=Hampe%2CA&amp;author=Port%C3%A9%2CAJ&amp;author=Sauer%2CU&amp;author=Compant%2CS&amp;author=Morris%2CCE\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR123\">Van Dongen S. \u201cGraph Clustering Via a Discrete Uncoupling Process.\u201d SIAM J Matrix Anal Appl. 2008;30(1):121\u201341.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 123\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CGraph%20Clustering%20Via%20a%20Discrete%20Uncoupling%20Process%E2%80%9D&amp;journal=SIAM%20J%20Matrix%20Anal%20Appl&amp;volume=30&amp;issue=1&amp;pages=121-141&amp;publication_year=2008&amp;author=Van%20Dongen%2CS\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR124\">Vorholt JA. \u201cMicrobial Life in the Phyllosphere.\u201d Nat Rev Microbiol. 2012. <a href=\"https:\/\/doi.org\/10.1038\/nrmicro2910\" data-track=\"click_references\" data-track-action=\"external reference\" data-track-value=\"external reference\" data-track-label=\"10.1038\/nrmicro2910\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/doi.org\/10.1038\/nrmicro2910<\/a>.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"10.1038\/nrmicro2910\" data-track-item_id=\"10.1038\/nrmicro2910\" data-track-value=\"article reference\" data-track-action=\"article reference\" href=\"https:\/\/doi.org\/10.1038%2Fnrmicro2910\" aria-label=\"Article reference 124\" data-doi=\"10.1038\/nrmicro2910\" target=\"_blank\">Article<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=23154261\" aria-label=\"PubMed reference 124\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 124\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CMicrobial%20Life%20in%20the%20Phyllosphere%E2%80%9D&amp;journal=Nat%20Rev%20Microbiol&amp;doi=10.1038%2Fnrmicro2910&amp;publication_year=2012&amp;author=Vorholt%2CJA\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR125\">Wang W, Schalamun M, Morales-Suarez A, Kainer D, Schwessinger B, Lanfear R. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case. BMC Genomics. 2018;19(1):977.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1MXhtV2ktrrP\" aria-label=\"CAS reference 125\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=30594129\" aria-label=\"PubMed reference 125\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6311037\" aria-label=\"PubMed Central reference 125\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 125\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Assembly%20of%20chloroplast%20genomes%20with%20long-%20and%20short-read%20data%3A%20a%20comparison%20of%20approaches%20using%20Eucalyptus%20pauciflora%20as%20a%20test%20case&amp;journal=BMC%20Genomics&amp;volume=19&amp;issue=1&amp;publication_year=2018&amp;author=Wang%2CW&amp;author=Schalamun%2CM&amp;author=Morales-Suarez%2CA&amp;author=Kainer%2CD&amp;author=Schwessinger%2CB&amp;author=Lanfear%2CR\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR126\">Warner DF, Ndwandwe DE, Abrahams GL, Kana BD, Machowski EE, Venclovas C, et al. Essential Roles for imuA\u2019- and imuB-Encoded Accessory Factors in DnaE2-Dependent Mutagenesis in Mycobacterium Tuberculosis. Proc Natl Acad Sci USA. 2010;107(29):13093\u20138.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3cXpsVCrtr4%3D\" aria-label=\"CAS reference 126\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=20615954\" aria-label=\"PubMed reference 126\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC2919956\" aria-label=\"PubMed Central reference 126\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 126\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Essential%20Roles%20for%20imuA%E2%80%99-%20and%20imuB-Encoded%20Accessory%20Factors%20in%20DnaE2-Dependent%20Mutagenesis%20in%20Mycobacterium%20Tuberculosis&amp;journal=Proc%20Natl%20Acad%20Sci%20USA&amp;volume=107&amp;issue=29&amp;pages=13093-13098&amp;publication_year=2010&amp;author=Warner%2CDF&amp;author=Ndwandwe%2CDE&amp;author=Abrahams%2CGL&amp;author=Kana%2CBD&amp;author=Machowski%2CEE&amp;author=Venclovas%2CC&amp;author=Mizrahi%2CV\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR127\">West PT, Probst AJ, Grigoriev IV, Thomas BC, Banfield JF. Genome-reconstruction for eukaryotes from complex natural microbial communities. Genome Res. 2018;28(4):569\u201380.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC1cXns1Cls78%3D\" aria-label=\"CAS reference 127\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=29496730\" aria-label=\"PubMed reference 127\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5880246\" aria-label=\"PubMed Central reference 127\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 127\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Genome-reconstruction%20for%20eukaryotes%20from%20complex%20natural%20microbial%20communities&amp;journal=Genome%20Res&amp;volume=28&amp;issue=4&amp;pages=569-580&amp;publication_year=2018&amp;author=West%2CPT&amp;author=Probst%2CAJ&amp;author=Grigoriev%2CIV&amp;author=Thomas%2CBC&amp;author=Banfield%2CJF\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR128\">Wickham H. ggplot2: Elegant Graphics for Data Analysis. New York: Springer-Verlag; 2016.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 128\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=ggplot2%3A%20Elegant%20Graphics%20for%20Data%20Analysis&amp;publication_year=2016&amp;author=Wickham%2CH\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR129\">Yamaguchi Y, Park J-H, Inouye M. Toxin-antitoxin systems in bacteria and archaea. Annu Rev Genet. 2011;45(1):61\u201379.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BC3MXhs1ahtrzJ\" aria-label=\"CAS reference 129\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=22060041\" aria-label=\"PubMed reference 129\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 129\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Toxin-antitoxin%20systems%20in%20bacteria%20and%20archaea&amp;journal=Annu%20Rev%20Genet&amp;volume=45&amp;issue=1&amp;pages=61-79&amp;publication_year=2011&amp;author=Yamaguchi%2CY&amp;author=Park%2CJ-H&amp;author=Inouye%2CM\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR130\">Yu G, Smith DK, Zhu H, Guan Yi, Lam T-Y. Ggtree\u202f: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods Ecol Evol. 2017;8(1):28\u201336.\u00a0Edited by Greg McInerny.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 130\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=Ggtree%20%3A%20an%20R%20package%20for%20visualization%20and%20annotation%20of%20phylogenetic%20trees%20with%20their%20covariates%20and%20other%20associated%20data&amp;journal=Methods%20Ecol%20Evol&amp;volume=8&amp;issue=1&amp;pages=28-36&amp;publication_year=2017&amp;author=Yu%2CG&amp;author=Smith%2CDK&amp;author=Zhu%2CH&amp;author=Guan%2CYi&amp;author=Lam%2CT-Y\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n<p class=\"c-article-references__text\" id=\"ref-CR131\">Zheng J, Ge Q, Yan Y, Zhang X, Huang Le, Yin Y. \u201cdbCAN3: Automated Carbohydrate-Active Enzyme and Substrate Annotation.\u201d Nucleic Acids Res. 2023;51(W1):W115\u201321.<\/p>\n<p class=\"c-article-references__links u-hide-print\"><a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"cas reference\" data-track-action=\"cas reference\" href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/cas-redirect\/1:CAS:528:DC%2BB2cXkvVCqtbY%3D\" aria-label=\"CAS reference 131\" target=\"_blank\">CAS<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed reference\" data-track-action=\"pubmed reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Abstract&amp;list_uids=37125649\" aria-label=\"PubMed reference 131\" target=\"_blank\">PubMed<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" rel=\"nofollow noopener\" data-track-label=\"link\" data-track-item_id=\"link\" data-track-value=\"pubmed central reference\" data-track-action=\"pubmed central reference\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC10320055\" aria-label=\"PubMed Central reference 131\" target=\"_blank\">PubMed Central<\/a>\u00a0<br \/>\n    <a data-track=\"click_references\" data-track-action=\"google scholar reference\" data-track-value=\"google scholar reference\" data-track-label=\"link\" data-track-item_id=\"link\" rel=\"nofollow noopener\" aria-label=\"Google Scholar reference 131\" href=\"http:\/\/scholar.google.com\/scholar_lookup?&amp;title=%E2%80%9CdbCAN3%3A%20Automated%20Carbohydrate-Active%20Enzyme%20and%20Substrate%20Annotation%E2%80%9D&amp;journal=Nucleic%20Acids%20Res&amp;volume=51&amp;issue=W1&amp;pages=W115-W121&amp;publication_year=2023&amp;author=Zheng%2CJ&amp;author=Ge%2CQ&amp;author=Yan%2CY&amp;author=Zhang%2CX&amp;author=Huang%2CLe&amp;author=Yin%2CY\" target=\"_blank\"><br \/>\n                    Google Scholar<\/a>\u00a0\n                <\/p>\n","protected":false},"excerpt":{"rendered":"Addison S, Armstrong C, Wigley K, Hartley R, Wakelin S. What matters most? Assessment of within-canopy factors influencing&hellip;\n","protected":false},"author":2,"featured_media":105768,"comment_status":"","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[7],"tags":[4682,69416,85,46,18494,69417,31369,24646,3488,69418,67514,141,31093],"class_list":{"0":"post-105767","1":"post","2":"type-post","3":"status-publish","4":"format-standard","5":"has-post-thumbnail","7":"category-science","8":"tag-bioinformatics","9":"tag-conifer","10":"tag-il","11":"tag-israel","12":"tag-medical-microbiology","13":"tag-metagenome","14":"tag-microbial-ecology","15":"tag-microbial-genetics-and-genomics","16":"tag-microbiology","17":"tag-mobile-genetic-elements","18":"tag-phyllosphere","19":"tag-science","20":"tag-virology"},"_links":{"self":[{"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/posts\/105767","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/comments?post=105767"}],"version-history":[{"count":0,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/posts\/105767\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/media\/105768"}],"wp:attachment":[{"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/media?parent=105767"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/categories?post=105767"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/tags?post=105767"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}