{"id":23261,"date":"2025-09-18T06:33:28","date_gmt":"2025-09-18T06:33:28","guid":{"rendered":"https:\/\/www.newsbeep.com\/il\/23261\/"},"modified":"2025-09-18T06:33:28","modified_gmt":"2025-09-18T06:33:28","slug":"multi-modal-characterization-of-metabolic-and-immune-gene-clusters-in-adrenocortical-carcinoma-treatment","status":"publish","type":"post","link":"https:\/\/www.newsbeep.com\/il\/23261\/","title":{"rendered":"Multi-modal characterization of metabolic and immune gene clusters in adrenocortical carcinoma treatment"},"content":{"rendered":"<p>Establishment of the TIME subtype<\/p>\n<p>According to recent literature, knowledge of the TIME should be the main emphasis of further ACC research<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 8\" title=\"Ghosh, C., Hu, J. &amp; Kebebew, E. Advances in translational research of the rare cancer type adrenocortical carcinoma. Nat. Rev. Cancer 23, 805&#x2013;824 (2023).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR8\" id=\"ref-link-section-d184067288e724\" rel=\"nofollow noopener\" target=\"_blank\">8<\/a>. Therefore, we analyzed 24 microenvironmental cell subpopulations using GSEA and classified ACC patients (TCGA\u2009+\u2009GSE76019\u2009+\u2009GSE76021) into three clusters based on ssGSEA (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig1\" rel=\"nofollow noopener\" target=\"_blank\">1a\u2013c<\/a>). The results were clear: TIME cluster A had the lowest ssGSEA scores, while TIME cluster C had the highest. In 23 microenvironmental cell subpopulations (excluding plasma cells), the three clusters exhibited statistically significant differences in scores. Patients in TIME cluster B had the best prognosis (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig1\" rel=\"nofollow noopener\" target=\"_blank\">1d<\/a>). Furthermore, four key immune checkpoints (PD-1, PD-L1, PD-L2, CTLA4) exhibited the lowest expression in TIME cluster A (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig1\" rel=\"nofollow noopener\" target=\"_blank\">1e\u2013h<\/a>).<\/p>\n<p>Fig. 1: TIME subtypes of ACC.<a class=\"c-article-section__figure-link\" data-test=\"img-link\" data-track=\"click\" data-track-label=\"image\" data-track-action=\"view figure\" href=\"https:\/\/www.nature.com\/articles\/s41698-025-01092-4\/figures\/1\" rel=\"nofollow noopener\" target=\"_blank\"><img decoding=\"async\" aria-describedby=\"Fig1\" src=\"https:\/\/www.newsbeep.com\/il\/wp-content\/uploads\/2025\/09\/41698_2025_1092_Fig1_HTML.png\" alt=\"figure 1\" loading=\"lazy\" width=\"685\" height=\"593\"\/><\/a><\/p>\n<p>a Heatmap showing the distribution of 3 different TIME cluster subtypes in 24 immune cells of ACC patients (TCGA\u2009+\u2009GSE76019\u2009+\u2009GSE76021). b Plot of principal component analysis (PCA) for the TIME clusters. c Differences in infiltration abundance of 24 immune cells in TIME cluster subtypes. * P\u2009&lt;\u20090.05, ** P\u2009&lt;\u20090.01, *** P\u2009&lt;\u20090.001, ns, no significance. d Kaplan-Meier curves were used to predict the overall survival of ACC patients in TIME cluster subtypes (log-rank test, P\u2009=\u20096.236e-04). e\u2013h Differences in CTLA4, PD-L1, PD-L2, and PD-1 expression in ACC patients in cluster subtypes. * p\u2009&lt;\u20090.05, ** p\u2009&lt;\u20090.01, *** p\u2009&lt;\u20090.001, ns, no significance.<\/p>\n<p>Establishment of subtypes based on DEGs<\/p>\n<p>Our analysis of the differential genes between the TIME clusters identified 18 common DEGs (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig2\" rel=\"nofollow noopener\" target=\"_blank\">2a<\/a>). These 18 genes underwent unsupervised hierarchical clustering analysis to find that the clustering stability was optimum at k\u2009=\u20092 (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig2\" rel=\"nofollow noopener\" target=\"_blank\">2b<\/a>, Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">2a\u2013c<\/a>). We validated the classification by repeating the clustering analysis on the original dataset and two independent GEO datasets (GSE33371 and GSE10927). The results align with the previous classification pattern (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig2\" rel=\"nofollow noopener\" target=\"_blank\">2c<\/a> and Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">2d\u2013f<\/a>). We named these groups Gene clusters A and B and plotted the expression heatmap of the 18 differentially expressed genes (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig2\" rel=\"nofollow noopener\" target=\"_blank\">2e<\/a>). Single-cell RNA sequencing data showed that these 18 genes were highly expressed in specific cell subsets and associated with immunity and metabolism (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig2\" rel=\"nofollow noopener\" target=\"_blank\">2f<\/a>). Patients in the Gene cluster B group had a better prognosis (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig2\" rel=\"nofollow noopener\" target=\"_blank\">2g<\/a>). This group showed high infiltration abundance in 19 microenvironment cell subsets and significantly high expression of four key immune checkpoints (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig2\" rel=\"nofollow noopener\" target=\"_blank\">2h, i<\/a>). Finally, we calculated the Steroid-related Immune Score (SIS) by PCA. We separated the 142 ACC patients into groups with high and low SIS based on the optimal cutoff value (1.041494).<\/p>\n<p>Fig. 2: Unsupervised clustering analysis of DEGs to classify ACC patients into Gene clusters A and B.<a class=\"c-article-section__figure-link\" data-test=\"img-link\" data-track=\"click\" data-track-label=\"image\" data-track-action=\"view figure\" href=\"https:\/\/www.nature.com\/articles\/s41698-025-01092-4\/figures\/2\" rel=\"nofollow noopener\" target=\"_blank\"><img decoding=\"async\" aria-describedby=\"Fig2\" src=\"https:\/\/www.newsbeep.com\/il\/wp-content\/uploads\/2025\/09\/41698_2025_1092_Fig2_HTML.png\" alt=\"figure 2\" loading=\"lazy\" width=\"685\" height=\"705\"\/><\/a><\/p>\n<p>a 18 common DEGs were selected from the TIME clusters. b Consensus clustering matrix heatmap with DEG-related molecular pattern in TCGA\u2009+\u2009GSE76019\u2009+\u2009GSE76021 when k\u2009=\u20092. c Consensus clustering matrix heatmap with DEG-related molecular pattern in TCGA\u2009+\u2009GSE76019\u2009+\u2009GSE76021\u2009+\u2009GSE33371\u2009+\u2009GSE10927 when k\u2009=\u20092. d The principal component analysis plot showing the distribution of Gene clusters. e The heatmap showing the expression distribution of DEGs. f The heatmap showing the expression distribution of DEGs in each cell type in the single-cell RNA sequencing data. g Kaplan-Meier curves for predicting the overall survival of ACC patients in Gene clusters (log-rank test, P\u2009=\u20090.003). h Differential infiltration of 24 immune cells in Gene clusters. * P\u2009&lt;\u20090.05, ** P\u2009&lt;\u20090.01, *** P\u2009&lt;\u20090.001, ns, no significance. i Differential expression of CTLA4, PD-L1, PD-L2, and PD-1 in ACC patients in Gene clusters. * P\u2009&lt;\u20090.05, ** P\u2009&lt;\u20090.01, *** P\u2009&lt;\u20090.001, ns, no significance.<\/p>\n<p>AI validation of SIS and associated pathological features<\/p>\n<p>Deep neural networks are an indispensable tool for medical image analysis. They can identify features that are difficult to detect by the naked eye, such as microsatellite instability (MSI), tumor mutation burden (TMB), and gene expression status<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 9\" title=\"Coudray, N. et al. Classification and mutation prediction from non-small cell lung cancer histopathology images using deep learning. Nat. Med. 24, 1559&#x2013;1567 (2018).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR9\" id=\"ref-link-section-d184067288e881\" rel=\"nofollow noopener\" target=\"_blank\">9<\/a>,<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 10\" title=\"Kather, J. N. et al. Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer. Nat. Med. 25, 1054&#x2013;1056 (2019).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR10\" id=\"ref-link-section-d184067288e884\" rel=\"nofollow noopener\" target=\"_blank\">10<\/a>. This study used deep learning technology to analyze whole slide images (WSIs), verified the effectiveness of SIS grouping, and explored its pathological characteristics to understand better the uniqueness of ACC (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig3\" rel=\"nofollow noopener\" target=\"_blank\">3a\u2013d<\/a>). We used two mainstream deep learning networks, ResNet50 and Vision Transformer-B16, for validation and comparison (Table <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"table anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Tab1\" rel=\"nofollow noopener\" target=\"_blank\">1<\/a>). The five-fold cross-validation results demonstrated that the AUC of the SIS classification reached 0.8\u2009\u00b1\u20090.01, with ResNet50 performing best (AUC\u2009=\u20090.8214, accuracy\u2009=\u20090.71) (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig3\" rel=\"nofollow noopener\" target=\"_blank\">3e, f<\/a>). Furthermore, ResNet50 excelled in the binary classification C1A\/B model prediction of ACC (AUC\u2009=\u20090.848, accuracy\u2009=\u20090.74) (Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">3b, c<\/a>), confirming the efficacy of SIS grouping in pathology. We created a heatmap in the original slice (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig3\" rel=\"nofollow noopener\" target=\"_blank\">3g<\/a>) to more clearly visualize the SIS grouping and its classification probability. We used Class Activation Maps (CAMs) technology to visualize the pathological features associated with the SIS subgroups. The findings indicated that the SIS correlated with sinusoidal invasion and necrosis in the Weiss score, and surprise, with lymphocytic infiltration (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig3\" rel=\"nofollow noopener\" target=\"_blank\">3h<\/a> and Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">3d<\/a>). To enhance the verification of the model\u2019s clinical application, we picked the ResNet50 model exhibiting optimal performance. We validated ACC patients from the First Affiliated Hospital of Dalian Medical University and the Second Affiliated Hospital of Dalian Medical University. The findings indicated that patients in the high SIS group exhibited significant lymphocytic infiltration. Conversely, patients in the low SIS group had minimal lymphocytic infiltration, with both groups marked by sinusoidal invasion and necrosis (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig3\" rel=\"nofollow noopener\" target=\"_blank\">3i<\/a>, Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">3e<\/a>). This suggests that the model exhibited consistent performance in the external validation set and possesses potential therapeutic applications. Subsequent prognostic follow-up assessments indicated that patients in the high SIS group had significantly prolonged survival periods compared to those in the low SIS group. However, owing to the restricted follow-up duration and patient population, the p-value failed to achieve statistical significance (p\u2009&gt;\u20090.05). Survival studies, after integrating these patients with those from the TCGA cohort, indicated a decrease in the p-value, implying that these patients align with the prognostic characteristics of the SIS subgroup (Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">3f, g<\/a>, Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">4a<\/a>).<\/p>\n<p>Fig. 3: Validation and application of SIS in deep learning.<a class=\"c-article-section__figure-link\" data-test=\"img-link\" data-track=\"click\" data-track-label=\"image\" data-track-action=\"view figure\" href=\"https:\/\/www.nature.com\/articles\/s41698-025-01092-4\/figures\/3\" rel=\"nofollow noopener\" target=\"_blank\"><img decoding=\"async\" aria-describedby=\"Fig3\" src=\"https:\/\/www.newsbeep.com\/il\/wp-content\/uploads\/2025\/09\/41698_2025_1092_Fig3_HTML.png\" alt=\"figure 3\" loading=\"lazy\" width=\"685\" height=\"786\"\/><\/a><\/p>\n<p>a Segmentation and background subtraction of pathological images. b Color normalization of patches. c Training of a deep learning model using patches from two subgroups of patients in the training set. d Testing of the trained model on all patches of patients in the test set and statistical classification of the patients. e Five-fold cross-validation AUC plot of ResNet50. f Five-fold cross-validation AUC plot of Vision Transformer. g WSIs from high SIS and low SIS tumor patients in the TCGA test set reveal spatial patterns associated with SIS prediction. h Lymphocyte infiltration in WSIs was found to correlate with SIS subtypes using CAMs. i The extent of lymphocyte infiltration found in WSIs in the external validation set.<\/p>\n<p>Table 1 Results of two models for classifying SIS subtypes and C1A\/B subtypes on WSIsThe new ACC subgroup SIS closely related to clinical outcomes<\/p>\n<p>Several subtypes have been identified in the ACC dataset, including the COC and C1A\/C1B subtypes(Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig4\" rel=\"nofollow noopener\" target=\"_blank\">4a<\/a>)<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 11\" title=\"Zheng, S. et al. Comprehensive pan-genomic characterization of adrenocortical carcinoma. Cancer Cell 29, 723&#x2013;736 (2016).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR11\" id=\"ref-link-section-d184067288e1182\" rel=\"nofollow noopener\" target=\"_blank\">11<\/a>,<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 12\" title=\"Assie, G. et al. Integrated genomic characterization of adrenocortical carcinoma. Nat. Genet. 46, 607&#x2013;612 (2014).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR12\" id=\"ref-link-section-d184067288e1185\" rel=\"nofollow noopener\" target=\"_blank\">12<\/a>. The high SIS group was more likely to correlate with the positive prognosis COC1 and the inactive C1B subtype. Conversely, the low SIS group was significantly correlated with the unfavorable prognosis of COC2 and COC3, as well as the aggressive C1A subtype. There are significant differences in SIS between the COC subtype, C1A\/C1B subtype, expression subtype, and methylation subtype (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig4\" rel=\"nofollow noopener\" target=\"_blank\">4b, c<\/a> and Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">4d, e<\/a>). The TCGA immune subtype analysis shows that ACC patients are mainly distributed in the C3 group with the best prognosis and the C4 group with the worst prognosis. The C3 group had the highest number of high SIS patients, while the C4 group had the highest number of low SIS patients. Patients in the C3 group had a SIS level much greater than those in the C4 group (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig4\" rel=\"nofollow noopener\" target=\"_blank\">4d<\/a>). Patients with high SIS have a favorable prognosis in the TCGA and GEO datasets (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig4\" rel=\"nofollow noopener\" target=\"_blank\">4e, f<\/a>, and Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">4a-c<\/a>). Univariate and multivariate Cox regression analysis clearly identified SIS as an independent prognostic factor for ACC patients (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig4\" rel=\"nofollow noopener\" target=\"_blank\">4h, i<\/a>). The low SIS group was composed mainly of patients with the following clinical parameters: female gender, T4, N1, M1, Stage III, and Stage IV (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig4\" rel=\"nofollow noopener\" target=\"_blank\">4j<\/a>). The Weiss score is crucial in the pathological diagnosis of ACC. The low SIS group accounted for over 50% of the Weiss score-related indicators, including necrosis, mitotic rate &gt; 5\/50 HPF, venous invasion, and sinusoidal (lymphatic) invasion (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig4\" rel=\"nofollow noopener\" target=\"_blank\">4g<\/a>). Epithelial-to-mesenchymal transition (EMT), tumor mutational burden (TMB), mRNA expression-based stemness index (mRNAsi), and Ki-67 are common biomarkers in oncology. ACC patients with high EMT, high TMB, high mRNAsi, and high Ki-67 generally have a poor prognosis, while patients in the low SIS group within these stratifications have the worst survival outcomes and vice versa (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig4\" rel=\"nofollow noopener\" target=\"_blank\">4k-n<\/a>). We identified mutations in known ACC genes (e.g., CTNNB1, ZNRF3)<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 12\" title=\"Assie, G. et al. Integrated genomic characterization of adrenocortical carcinoma. Nat. Genet. 46, 607&#x2013;612 (2014).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR12\" id=\"ref-link-section-d184067288e1218\" rel=\"nofollow noopener\" target=\"_blank\">12<\/a> and also found mutations in some new genes (e.g., TTN, HLTF, ADAMTS16, NSD1, and PARP8) (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig4\" rel=\"nofollow noopener\" target=\"_blank\">4o<\/a>). The only exception was HLTF, which exhibited a high mutation rate in the high SIS group, while the other genes were almost exclusively mutated in the low SIS group.<\/p>\n<p>Fig. 4: The SIS subgroups were constructed and are closely related to clinical outcomes.<a class=\"c-article-section__figure-link\" data-test=\"img-link\" data-track=\"click\" data-track-label=\"image\" data-track-action=\"view figure\" href=\"https:\/\/www.nature.com\/articles\/s41698-025-01092-4\/figures\/4\" rel=\"nofollow noopener\" target=\"_blank\"><img decoding=\"async\" aria-describedby=\"Fig4\" src=\"https:\/\/www.newsbeep.com\/il\/wp-content\/uploads\/2025\/09\/41698_2025_1092_Fig4_HTML.png\" alt=\"figure 4\" loading=\"lazy\" width=\"685\" height=\"675\"\/><\/a><\/p>\n<p>a The distribution of various ACC subtypes and pathological parameters in SIS subgroups. b Distribution of SIS in COC subtypes. c Distribution of SIS in C1A\/C1B subtypes. d Distribution of SIS in Immune subtypes. e The Kaplan-Meier curve was used to predict the overall survival of the SIS (TCGA\u2009+\u2009GSE76019\u2009+\u2009GSE76021)(log-rank test, P\u2009=\u20092.281e-04). f The Kaplan-Meier curve was used to predict the overall survival of the SIS (TCGA\u2009+\u2009GSE76019\u2009+\u2009GSE76021\u2009+\u2009GSE33371\u2009+\u2009GSE10927) (log-rank test, P\u2009=\u20092.498e-04). g The distribution of SIS subgroups in the Weiss Scoring System is shown in a Likert plot. * P\u2009&lt;\u20090.05, ** P\u2009&lt;\u20090.01, *** P\u2009&lt;\u20090.001. h, i Univariate and multivariate analysis of clinical characteristics. j Distribution of SIS subgroups across clinical characteristics. k-n Kaplan-Meier curves for the prediction of overall survival in ACC patients with Ki-67, EMT, TMB, and mRNAsi and their stratification in SIS. o Genomic alterations in SIS subgroups.<\/p>\n<p>The low SIS group closely related to steroid synthesis<\/p>\n<p>According to KEGG GSEA and GSVA analysis, the high SIS group exhibited enrichment in immune-related pathways, whereas the low SIS group had enrichment in steroid biosynthesis pathways. The HALLMARK GSEA and GSVA analyses indicated that the high SIS group had enrichment in immunological pathways, while the low SIS group demonstrated enrichment in cholesterol homeostasis pathways (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5a, b<\/a>, Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">6a, b<\/a>). We speculate that patients with high SIS may be related to immune response, while patients with low SIS may be related to adrenal function. SIS was substantially negatively correlated with the adrenal cortical differentiation index (ADS) (r\u2009=\u2009\u22120.62) (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5e<\/a>). Most patients with high SIS were predicted to have low ADS (71.4%) and did not have abnormal hormone (61.5%) or cortisol (80.8%) secretion. In contrast, most patients with low SIS were predicted to have high ADS (66%) and had abnormal hormone (78.7%) and cortisol (57.4%) secretion (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5d<\/a>). In the cortisol present group, 84% of patients exhibited low SIS or high ADS. In the hormone present group, 79% of patients had low SIS, which is greater than the 70% of patients with high ADS. Therefore, low SIS is a more effective assessment of adrenal function than high ADS (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5f, g<\/a>). We screened nine core genes related to steroid hormone synthesis by HALLMARK_CHOLESTEROL_HOMEOSTASIS and KEGG_STEROID_BIOSYNTHESIS analysis (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5c<\/a>). Mitotane is the main drug to inhibit ACC steroid hormone synthesis, which mainly inhibits SOAT1, which is related to cholesterol storage, and CYP11A1 and CYP11B1, which are associated with the conversion of cholesterol to cortisol and aldosterone (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5m<\/a>). Among the 12 core genes, DHCR7, CYP51A1, SOAT1, and CYP11A1 were highly correlated with SIS and ADS. DHCR7 was significantly and stably differentially expressed among them in the hormone-related subgroup, while the other genes were more variable (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5h<\/a>). Except for EBP, CYP11A1, and CYP11B1, genomic alterations were more common in the low SIS group compared to the high SIS group, particularly for DHCR7, SOAT1, and FDFT1, which showed no alterations in the high SIS group but \u226510% alterations in the low SIS group (Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">5a<\/a>). Among these 12 genes, only patients with DHCR7 genomic alterations showed poor prognosis in overall survival (OS), progression-free survival (PFS), and disease-specific survival (DSS) (Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">5b\u2013d<\/a>). In contrast, patients with SOAT1 genomic alterations showed poor prognosis only in PFS (Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">5e\u2013g<\/a>). The metabolic genes most associated with SIS features, DHCR7 and SC5D, were further investigated by Lasso regression, Random Forest(RF), and Support Vector Machine &#8211; Recursive Feature Elimination(SVM-RFE) machine learning methods (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5i<\/a>). In the pan-cancer expression analysis, DHCR7 showed the highest expression in ACC, while SC5D exhibited an intermediate expression level. Nevertheless, high expression of both was associated with poorer patient prognosis (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5j<\/a> and Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">5h\u2013j<\/a>). After extensive analysis, we concluded that DHCR7 is a potential molecular marker for ACC. Single-cell RNA sequencing results showed that DHCR7 was specifically expressed in cancer cells (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5l<\/a>).IHC results showed elevated DHCR7 protein expression in tumor tissues (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5k<\/a>). CCK-8 assay results showed that NCI-H295R cells (IC50\u2009=\u20094.684\u2009\u03bcM) were more sensitive to Mitotane than SW-13 cells (IC50\u2009=\u20096.918\u2009\u03bcM) (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5l, m<\/a>). Mitotane sensitivity was significantly increased in both DHCR7 knockdown cells (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig5\" rel=\"nofollow noopener\" target=\"_blank\">5n, o<\/a>).<\/p>\n<p>Fig. 5: SIS is associated with steroid hormone synthesis.<a class=\"c-article-section__figure-link\" data-test=\"img-link\" data-track=\"click\" data-track-label=\"image\" data-track-action=\"view figure\" href=\"https:\/\/www.nature.com\/articles\/s41698-025-01092-4\/figures\/5\" rel=\"nofollow noopener\" target=\"_blank\"><img decoding=\"async\" aria-describedby=\"Fig5\" src=\"https:\/\/www.newsbeep.com\/il\/wp-content\/uploads\/2025\/09\/41698_2025_1092_Fig5_HTML.png\" alt=\"figure 5\" loading=\"lazy\" width=\"685\" height=\"824\"\/><\/a><\/p>\n<p>a, b KEGG and HALLMARK GSEA in SIS subgroups. c Common genes screened from the core genes of the two enrichment pathways. d The distribution of the ensemble of ADS, hormone, and cortisol levels among SIS subgroups. e Correlation between SIS and ADS. f, g SIS and ADS are distributed over hormones and cortisol, respectively. h Correlation of steroid hormone-related genes and Mitotane primary target genes with SIS and ADS expression. Expression values were compared with low SIS, high ADS, hormone present, and cortisol present. i Lasso regression, RF, and SVM-RFE machine learning jointly screened for genes most associated with SIS. j Kaplan-Meier curve was used to predict DHCR7 overall survival. k Protein expression of DHCR7 in ACC tissues and normal adrenal tissues by IHC. l Distribution of DHCR7 expression in single-cell RNA sequencing. m Mechanistic pathways associated with DHCR7 and Mitotane. n Cell viability was assessed after treatment with different concentrations of Mitotane in SW-13 cells. Control or DHCR7 siRNA was transfected, incubated for 48\u2009h, and then collected for RT-PCR analysis of the DHCR7 gene. Cell viability was assessed after treatment of SW-13 cells with control or DHCR7 siRNA transfected with Mitotane (6.9\u2009\u03bcM) for 48\u2009h. o Cell viability was evaluated in NCI-H295R cells treated with varying concentrations of Mitotane, as well as in cells transfected with control or DHCR7 siRNA and incubated for 48\u2009h, followed by RT-PCR analysis of DHCR7 expression. Cell viability was assessed after treatment of NCI-H295R cells with control, or DHCR7 siRNA transfected with Mitotane (4.7\u2009\u03bcM) for 48\u2009hours. * P\u2009&lt;\u20090.05, ** P\u2009&lt;\u20090.01, *** P\u2009&lt;\u20090.001.<\/p>\n<p>The high SIS group closely related to immunity<\/p>\n<p>The findings from GSEA and GSVA indicated that patients in the high SIS group exhibited more pronounced tumor immune features Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">6a, b<\/a>). Therefore, we investigated the relationship of SIS with the ESTIMATE score and the abundance of immune cell infiltration more closely. The results showed that the high SIS group had a much stronger correlation with the ESTIMATE score than the low SIS group did within the same dataset. In fact, the high SIS group had a correlation that was above 0.8 in both datasets (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6a<\/a>). Regarding the abundance of immune cell infiltration, both groups showed correlations with increased monocytes, decreased neutrophils, decreased basophils, decreased natural killer cells, decreased naive CD8 T cells, and increased cytotoxic cells. The abundance of CD8 T cells and Tfh cells in the high SIS group increased with increasing SIS. In contrast, in the low SIS group, the abundance of macrophages, macrophages M1, macrophages M2, and activated NK cells increased with lower SIS (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6b<\/a>). Through machine learning analysis, pan-cancer immune studies revealed four immune-related factors\u2014MHC, CP, EC, and SC<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 13\" title=\"Charoentong, P. et al. Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade. Cell Rep. 18, 248&#x2013;262 (2017).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR13\" id=\"ref-link-section-d184067288e1421\" rel=\"nofollow noopener\" target=\"_blank\">13<\/a>. ACC analysis revealed higher MHC and EC levels, and lower CP and SC levels in the high SIS group (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6c<\/a>). Meanwhile, the high SIS group exhibited a significantly higher immunophenoscore (IPS) (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6d<\/a>). TIP analysis revealed higher activity scores for CD8 T cells, macrophages, NK cells, and infiltration of immune cells into tumors (step 5) in the high SIS group (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6e<\/a>). And the overall activity score strongly correlated with SIS (r\u2009=\u20090.69) (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6f<\/a>). Analysis of the 5 immune expression signatures revealed higher, statistically significant scores in the high SIS group (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6g<\/a>). In addition, immune infiltration is associated with DNA damage<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 14\" title=\"Thorsson, V. et al. The immune landscape of cancer. Immunity 48, 812&#x2013;830 (2018).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR14\" id=\"ref-link-section-d184067288e1441\" rel=\"nofollow noopener\" target=\"_blank\">14<\/a>. Our analysis revealed lower SNV neoantigens, nonsilent mutation rate, copy number variation (CNV) burden (number of segments), and homologous recombination deficiency (HRD) in the high SIS group, in addition to the group having a low proliferation rate (Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">6f<\/a>). Immunity quantitative trait loci (immunQTLs) were applied to assess the impact of genetic variants on immune infiltration. Survival-associated immunQTLs (FDR\u2009&lt;\u20090.05) GWAS analyses revealed the highest number of QTLs for regulatory T cells (Tregs), followed by CD8 T cells, and the lowest number for resting CD4 memory T cells (Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">6g<\/a>). Among these GWAS disorders, the highest number of calcium level-related QTLs were all from Tregs. Schizophrenia involves T-cell regulatory (Tregs), T-cell CD8, macrophages M1, and T-cell CD4 memory resting, with the widest coverage. TIDE is an important indicator for predicting tumor response to immune checkpoint blockade (ICB). Both TCGA and GEO datasets showed that SIS was significantly negatively correlated with TIDE (Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">6c, d<\/a>). Over 70% of patients in the high SIS group responded to ICB, while more than 65% in the low SIS group were resistant. Notably, the low SIS group represented over 80% of ICB-resistant patients (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6h, i<\/a>). TIDE\u2019s two main immune escape mechanisms are associated with T cell dysfunction and T cell exclusion, respectively<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 15\" title=\"Jiang, P. et al. Signatures of t cell dysfunction and exclusion predict cancer immunotherapy response. Nat. Med. 24, 1550&#x2013;1558 (2018).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR15\" id=\"ref-link-section-d184067288e1458\" rel=\"nofollow noopener\" target=\"_blank\">15<\/a>. Our data indicate that the immune escape mechanism in ACC is primarily associated with T cell dysfunction. Cancer-associated fibroblasts (CAFs), myeloid-derived suppressor cells (MDSCs), and the M2 subtype of tumor-associated macrophages (TAMs) are the three main cell types that suppress T-cell infiltration<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 16\" title=\"Joyce, J. A. &amp; Fearon, D. T. T cell exclusion, immune privilege, and the tumor microenvironment. Science 348, 74&#x2013;80 (2015).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR16\" id=\"ref-link-section-d184067288e1462\" rel=\"nofollow noopener\" target=\"_blank\">16<\/a>. A significant negative correlation was observed between the high SIS group and TAM M2. In addition, the immune profile of ACC was strongly correlated with interferon-gamma (IFNG) response and T-cell inflammatory phenotype (Merck18)(Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">6e<\/a>)<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 17\" title=\"Ayers, M. et al. Ifn-gamma-related mRNA profile predicts clinical response to PD-1 blockade. J. Clin. Invest. 127, 2930&#x2013;2940 (2017).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR17\" id=\"ref-link-section-d184067288e1470\" rel=\"nofollow noopener\" target=\"_blank\">17<\/a>. We further assessed the expression of three molecules associated with tumor escape mechanisms in the low SIS group\u2014Most MHC molecules were underexpressed in the low SIS group, thus avoiding T cell recognition; immunosuppressive factors (e.g., TGFBR1) might be upregulated for tumor escape; and immunostimulatory factors (e.g., RAET1E) might be downregulated to avoid immune attack (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6j<\/a>).<\/p>\n<p>We selected a low-SIS patient (with abnormal hormone secretion) for single-cell RNA sequencing analysis to explore the interaction between the tumor and its microenvironment. The analysis revealed the cell subpopulations of this patient were mainly concentrated in cancer cells (78.95%), macrophages (15.44%), progenitor cells (3.42%), mesenchymal cells (1.17%), T cells (0.65%), and endothelial cells (0.38%) (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6k<\/a>, Supplementary Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"supplementary material anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#MOESM1\" rel=\"nofollow noopener\" target=\"_blank\">7<\/a>). We screened 79 exosome-associated genes specifically expressed in tumor cells (avg_log2FC\u2009&gt;\u20090.4), and KEGG showed that these genes were enriched in hormone synthesis and secretion pathways, in addition to metabolic reprogramming and energy metabolism pathways, immune evasion and TIME pathways, and drug metabolism and resistance pathways (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6l<\/a>). Using HitPredict and CellphoneDB analyses, we found that these exosomes interacted with ligand receptors of immune cells, with more than 65% of the interactions involving T cells and macrophages. Most of these exosomes were highly expressed in the TCGA and GEO datasets in low SIS patients (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6m<\/a>). These genes were strongly associated with tumor, extracellular matrix, and immune processes (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig6\" rel=\"nofollow noopener\" target=\"_blank\">6n<\/a>). Unexpectedly, some genes (e.g., AXL, HGF, PDGFB, and PDGFRB) were associated with EGFR tyrosine kinase inhibitor resistance.<\/p>\n<p>Fig. 6: Immunological characterization of ACC SIS subgroups.<a class=\"c-article-section__figure-link\" data-test=\"img-link\" data-track=\"click\" data-track-label=\"image\" data-track-action=\"view figure\" href=\"https:\/\/www.nature.com\/articles\/s41698-025-01092-4\/figures\/6\" rel=\"nofollow noopener\" target=\"_blank\"><img decoding=\"async\" aria-describedby=\"Fig6\" src=\"https:\/\/www.newsbeep.com\/il\/wp-content\/uploads\/2025\/09\/41698_2025_1092_Fig6_HTML.png\" alt=\"figure 6\" loading=\"lazy\" width=\"685\" height=\"820\"\/><\/a><\/p>\n<p>a Correlation analysis between SIS subgroups and tumor microenvironment ESTIMATE score. b Heatmap of immune cell infiltration in different SIS groups. c Relationship between SIS and MHC, EC, SC, and CP. d Distribution and comparison of IPS in SIS subgroups. e Heatmap of immune activity scores of seven-step cancer-immunity cycle under SIS subgroup. f Correlation between SIS and Overall activity scores. g Heatmap of five characteristic immune expression signature scores under SIS subgroups, * P\u2009&lt;\u20090.05, ** P\u2009&lt;\u20090.01, *** P\u2009&lt;\u20090.001. h Correlation analysis of SIS with TIDE and immunotherapy response in the TCGA cohort. i Correlation analysis of SIS with TIDE and immunotherapy response in the GEO cohort. j Expression patterns of immune-related genes in SIS subgroups. k UMAP analysis of cell type distribution. l KEGG enrichment pathway analysis of ACC-associated exosomes. m Interaction relationship between ACC exosomes and immune-related cell ligand receptors and their expression. n KEGG enrichment pathway analysis of exosomes and their associated ligand receptors.<\/p>\n<p>Drug sensitivity prediction based on SIS subgroups<\/p>\n<p>We successfully predicted drug sensitivity for SIS subgroups using the GDSC1 and GDSC2 datasets. The results showed that patients in the high SIS group were significantly more responsive to drugs targeting the PI3K\/Akt\/mTOR pathway (90%). Additionally, drugs targeting the following pathways showed greater sensitivity in this group: 54.5% on the Autophagy pathway, 40.9% on PI3K\/Akt\/mTOR pathway, and 18.2% on the Protein Tyrosine Kinase\/RTK pathway. Furthermore, the GDSC1 and GDSC2 datasets showed that BI-2536 (PLK1 inhibitor) was more effective in the low SIS group based on the TCGA and GEO datasets (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig7\" rel=\"nofollow noopener\" target=\"_blank\">7a<\/a>). SPIED3 also predicted increased sensitivity to the MTOR inhibitor in the high SIS group, consistent with the GDSC results (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig7\" rel=\"nofollow noopener\" target=\"_blank\">7b<\/a>). CMap analysis, on the other hand, confidently identified several drugs with increased sensitivity in the low SIS group, including calmodulin antagonists<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 18\" title=\"Spat, A., Hunyady, L. &amp; Szanda, G. Signaling interactions in the adrenal cortex. Front. Endocrinol. 7, 17 (2016).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR18\" id=\"ref-link-section-d184067288e1573\" rel=\"nofollow noopener\" target=\"_blank\">18<\/a>,<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 19\" title=\"Hall, P. F. The roles of calmodulin, actin, and vimentin in steroid synthesis by adrenal cells. Steroids 62, 185&#x2013;189 (1997).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR19\" id=\"ref-link-section-d184067288e1576\" rel=\"nofollow noopener\" target=\"_blank\">19<\/a>, dopamine receptor antagonists<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 20\" title=\"Wu, K. D. et al. Expression and localization of human dopamine d2 and d4 receptor mrna in the adrenal gland, aldosterone-producing adenoma, and pheochromocytoma. J. Clin. Endocrinol. Metab. 86, 4460&#x2013;4467 (2001).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR20\" id=\"ref-link-section-d184067288e1580\" rel=\"nofollow noopener\" target=\"_blank\">20<\/a>, oxidosqualene cyclase inhibitors<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 21\" title=\"Sh, S. &amp; Sm, H. Should oxidosqualene cyclase in the cholesterol biosynthetic pathway be considered an anti-cancer target? Front. Cell. Dev. Biol. 10, 1081151 (2022).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR21\" id=\"ref-link-section-d184067288e1584\" rel=\"nofollow noopener\" target=\"_blank\">21<\/a>, serotonin receptor antagonists<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 22\" title=\"Lefebvre, H., Contesse, V., Delarue, C., Vaudry, H. &amp; Kuhn, J. M. Serotonergic regulation of adrenocortical function. Horm. Metab. Res. 30, 398&#x2013;403 (1998).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR22\" id=\"ref-link-section-d184067288e1589\" rel=\"nofollow noopener\" target=\"_blank\">22<\/a>, and sterol demethylase inhibitors<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 23\" title=\"Zarn, J. A., Bruschweiler, B. J. &amp; Schlatter, J. R. Azole fungicides affect mammalian steroidogenesis by inhibiting sterol 14 alpha-demethylase and aromatase. Environ. Health Perspect. 111, 255&#x2013;261 (2003).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR23\" id=\"ref-link-section-d184067288e1593\" rel=\"nofollow noopener\" target=\"_blank\">23<\/a>. All of these drugs inhibited steroid hormone synthesis, supporting our finding that the low SIS group exhibited adrenal function characteristics (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig7\" rel=\"nofollow noopener\" target=\"_blank\">7c<\/a>). SPIED3 and CMap together predicted four classes of drugs to be effective for patients in the low SIS group: acetylcholine receptor antagonist (mebeverine), dopamine receptor antagonist, BCR-ABL kinase inhibitor (imatinib), and norepinephrine reuptake inhibitor (maprotiline) (Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig7\" rel=\"nofollow noopener\" target=\"_blank\">7d<\/a>). Notably, all dopamine receptor antagonists are used for the treatment of schizophrenia. Furthermore, single-cell RNA sequencing revealed that the tumor cell-specific genes identified were significantly enriched in the CALCIUM ION BINDING and IRON ION BINDING pathways, both of which are associated with schizophrenia, in the GO-MF enrichment analysis(Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig7\" rel=\"nofollow noopener\" target=\"_blank\">7e<\/a>)<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 24\" title=\"Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis. Lancet 381, 1371&#x2013;1379 (2013).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR24\" id=\"ref-link-section-d184067288e1606\" rel=\"nofollow noopener\" target=\"_blank\">24<\/a>,<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 25\" title=\"Lotan, A. et al. Perturbed iron biology in the prefrontal cortex of people with schizophrenia. Mol. Psychiatry 28, 2058&#x2013;2070 (2023).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR25\" id=\"ref-link-section-d184067288e1609\" rel=\"nofollow noopener\" target=\"_blank\">25<\/a>. The CHP1 gene plays a role in calcium metabolism and facilitates ferroptosis. The PCLO gene, linked to calcium metabolism, shows a significant association with schizophrenia(Fig. <a data-track=\"click\" data-track-label=\"link\" data-track-action=\"figure anchor\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#Fig7\" rel=\"nofollow noopener\" target=\"_blank\">7f<\/a>)<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 26\" title=\"Liu, D. et al. Schizophrenia risk conferred by rare protein-truncating variants is conserved across diverse human populations. Nat. Genet. 55, 369&#x2013;376 (2023).\" href=\"http:\/\/www.nature.com\/articles\/s41698-025-01092-4#ref-CR26\" id=\"ref-link-section-d184067288e1617\" rel=\"nofollow noopener\" target=\"_blank\">26<\/a>.<\/p>\n<p>Fig. 7: Sensitivity drugs associated with SIS subgroups.<a class=\"c-article-section__figure-link\" data-test=\"img-link\" data-track=\"click\" data-track-label=\"image\" data-track-action=\"view figure\" href=\"https:\/\/www.nature.com\/articles\/s41698-025-01092-4\/figures\/7\" rel=\"nofollow noopener\" target=\"_blank\"><img decoding=\"async\" aria-describedby=\"Fig7\" src=\"https:\/\/www.newsbeep.com\/il\/wp-content\/uploads\/2025\/09\/41698_2025_1092_Fig7_HTML.png\" alt=\"figure 7\" loading=\"lazy\" width=\"685\" height=\"808\"\/><\/a><\/p>\n<p>a Heatmap showing GDSC1 and GDSC2 drugs with statistically significant differences in the SIS subgroups in the TCGA and GEO cohorts, and the pathways affected by these drugs are included. b Screening of CMap drugs consistently associated with TCGA and GEO from the top 200 SPIED3 drugs related to SIS. c Screening of Score\u2009&lt;\u2009-90 or Score&gt;90 in TCGA and GEO consistently related drugs from CMap. d SPIED3 and CMap identified four drugs that are potentially effective for the low SIS group. e GO-MF enrichment analysis of genes specifically expressed in tumor cells. f Heatmap of genes associated with iron metabolism &amp; ferroptosis, calcium metabolism, and schizophrenia in single-cell sequencing results.<\/p>\n","protected":false},"excerpt":{"rendered":"Establishment of the TIME subtype According to recent literature, knowledge of the TIME should be the main emphasis&hellip;\n","protected":false},"author":2,"featured_media":23262,"comment_status":"","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[5],"tags":[114,4744,6844,21255,11184,3181,5069,85,3861,46,6134,4712,21256,3172,21257,21258],"class_list":["post-23261","post","type-post","status-publish","format-standard","has-post-thumbnail","category-business","tag-business","tag-cancer-research","tag-drug-development","tag-endocrine-cancer","tag-gene-therapy","tag-general","tag-human-genetics","tag-il","tag-internal-medicine","tag-israel","tag-medicine-public-health","tag-oncology","tag-prognostic-markers","tag-translational-research","tag-tumour-immunology","tag-urological-cancer"],"_links":{"self":[{"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/posts\/23261","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/comments?post=23261"}],"version-history":[{"count":0,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/posts\/23261\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/media\/23262"}],"wp:attachment":[{"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/media?parent=23261"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/categories?post=23261"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.newsbeep.com\/il\/wp-json\/wp\/v2\/tags?post=23261"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}