{"id":324299,"date":"2026-03-11T14:45:10","date_gmt":"2026-03-11T14:45:10","guid":{"rendered":"https:\/\/www.newsbeep.com\/nz\/324299\/"},"modified":"2026-03-11T14:45:10","modified_gmt":"2026-03-11T14:45:10","slug":"a-genome-wide-magic-kit-for-recombinase-independent-mosaic-analysis-in-drosophila","status":"publish","type":"post","link":"https:\/\/www.newsbeep.com\/nz\/324299\/","title":{"rendered":"A genome-wide MAGIC kit for recombinase-independent mosaic analysis in Drosophila"},"content":{"rendered":"<p>Genetic reagent (D. melanogaster)gRNA-40D2-tgFE-uH<a href=\"#bib1\">Allen et al., 2021<\/a>w; gRNA-40D2-tgFE-uHVK00037Genetic reagent (D. melanogaster)gRNA-40D2-Qtg2.1-uDEHThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606005\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606005<\/a>w; gRNA-40D2-Qtg2.1-uDEHVK00037; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-40D4-tgFE-uH<a href=\"#bib1\">Allen et al., 2021<\/a>w; gRNA-40D4-tgFE-uHVK00037Genetic reagent (D. melanogaster)gRNA-40E1-tgFE-uH<a href=\"#bib1\">Allen et al., 2021<\/a>RRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606004\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606004<\/a>w; gRNA-40E1-tgFE-uHVK00037Genetic reagent (D. melanogaster)gRNA-42A4-Qtg2.1-uDEHThis studyw; gRNA-42A4-Qtg2.1-uDEHVK00018; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-41F9-Qtg2.1-uDEHThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606006\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606006<\/a>w; gRNA-41F9-Qtg2.1-uDEHVK00018; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-41F11-Qtg2.1-uDEHThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606007\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606007<\/a>w; gRNA-41F11-Qtg2.1-uDEHVK00018; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-42A4-Qtg2.1-tDEHThis studyw; gRNA-42A4-Qtg2.1-tDEHVK00018; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-42A4-Qtg2.1-tDESThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606008\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606008<\/a>w; gRNA-42A4-Qtg2.1-tDESVK00018; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-80F5-Qtg2.1-tDEHThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606014\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606014<\/a>w; gRNA-80F5-Qtg2.1-tDEHattP2; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-80C2-Qtg2.1-tDEHThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606013\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606013<\/a>w; gRNA-80C2-Qtg2.1-tDEHattP2; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-80C1-Qtg2.1-tDEHThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606012\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606012<\/a>w; gRNA-80C1-Qtg2.1-tDEHattP2; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-81F-Qtg2.1-tDEHThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606020\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606020<\/a>w; gRNA-81F-Qtg2.1-tDEHVK00027; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-82A4-Qtg2.1-tDEHThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606018\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606018<\/a>w; gRNA-82A4-Qtg2.1-tDEHVK00027; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-82C3-Qtg2.1-tDEHThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606019\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606019<\/a>w; gRNA-82C3-Qtg2.1-tDEHVK00027; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-X2-Qtg2.1-tDESThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606024\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606024<\/a>w; gRNA-X2-Qtg2.1-tDESattP18; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-20F1-Qtg2.1-tDESThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606025\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606025<\/a>w; gRNA-20F1-Qtg2.1-tDESattP18; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-20F2-Qtg2.1-tDESThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606026\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606026<\/a>w; gRNA-20F2-Qtg2.1-tDESattP18; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-101F1a-Qtg2.1-tDESThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606776\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606776<\/a>w; gRNA-101F1a-Qtg2.1-tDESattP[102D]; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-101F1b-Qtg2.1-tDESThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606777\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606777<\/a>w; gRNA-101F1b-Qtg2.1-tDESattP[102D]; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-101F1c-Qtg2.1-tDESThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606778\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606778<\/a>w; gRNA-101F1c-Qtg2.1-tDESattP[102D]; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-40D2-nlsBFP<a href=\"#bib1\">Allen et al., 2021<\/a>w; gRNA-40D2-nlsBFPVK00037Genetic reagent (D. melanogaster)gRNA-40D4-nlsBFP<a href=\"#bib1\">Allen et al., 2021<\/a>w; gRNA-40D4-nlsBFPVK00037Genetic reagent (D. melanogaster)gRNA-40E1-nlsBFP<a href=\"#bib1\">Allen et al., 2021<\/a>RRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606003\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606003<\/a>w; gRNA-40E1-nlsBFPVK00037Genetic reagent (D. melanogaster)gRNA-40D2-tub-IFP-HAThis studyw; gRNA-40D2-tub-IFP-HAVK00037; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-42A4-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606011\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606011<\/a>w; gRNA-42A4-tub-BFP-HAVK00018; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-41F9-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606010\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606010<\/a>w; gRNA-41F9-tub-BFP-HAVK00018; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-41F11-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606009\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606009<\/a>w; gRNA-41F11-tub-BFP-HAVK00018; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-80F5-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606017\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606017<\/a>w; gRNA-80F5-tub-BFP-HAattP2; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-80C2-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606016\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606016<\/a>w; gRNA-80C2-tub-BFP-HAattP2; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-80C1-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606015\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606015<\/a>w; gRNA-80C1-tub-BFP-HAattP2; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-81F-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606021\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606021<\/a>w; gRNA-81F-tub-BFP-HAVK00027; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-82A4-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606022\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606022<\/a>w; gRNA-82A4-tub-BFP-HAVK00027; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-82C3-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606023\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606023<\/a>w; gRNA-82C3-tub-BFP-HAVK00027; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-X2-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606028\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606028<\/a>w; gRNA-X2-tub-BFP-HAattP18; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-20F1-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606779\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606779<\/a>w; gRNA-20F1-tub-BFP-HAattP18; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-20F2-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606029\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606029<\/a>w; gRNA-20F2-tub-BFP-HAattP18; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-101F1a-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606780\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606780<\/a>w; gRNA-101F1a-tub-BFP-HAattP[102D]; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-101F1b-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606781\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606781<\/a>w; gRNA-101F1b-tub-BFP-HAattP[102D]; in Materials and methodsGenetic reagent (D. melanogaster)gRNA-101F1c-tub-BFP-HAThis studyRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_606782\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_606782<\/a>w; gRNA-101F1c-tub-BFP-HAattP[102D]; in Materials and methodsGenetic reagent (D. melanogaster)pxn-Gal4<a href=\"#bib22\">Han et al., 2014<\/a>Genetic reagent (D. melanogaster)UAS-CD4-tdTom<a href=\"#bib21\">Han et al., 2011<\/a>RRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_35841\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_35841<\/a>UAS-CD4-tdTom7M1Genetic reagent (D. melanogaster)hh-Cas9<a href=\"#bib34\">Poe et al., 2019<\/a>R28E04-Cas96AGenetic reagent (D. melanogaster)zk-cas9<a href=\"#bib1\">Allen et al., 2021<\/a>zk-Cas9VK00037Genetic reagent (D. melanogaster)hs-cas9<a href=\"#bib15\">Garcia-Marques et al., 2020<\/a>Genetic reagent (D. melanogaster)Gal421-7<a href=\"#bib21\">Han et al., 2011<\/a>Genetic reagent (D. melanogaster)UAS-MApHS<a href=\"#bib22\">Han et al., 2014<\/a>UAS-MApHSVK00019Genetic reagent (D. melanogaster)RabX4-Gal4Bloomington Drosophila Stock CenterRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_51602\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_51602<\/a>Genetic reagent (D. melanogaster)R38F11-Gal4Bloomington Drosophila Stock CenterRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_50014\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_50014<\/a>R38F11-Gal4attP2Genetic reagent (D. melanogaster)ey-Cas9<a href=\"#bib24\">Ji et al., 2022<\/a>ey-Cas9VK00005Genetic reagent (D. melanogaster)vas-cas9<a href=\"#bib29\">L\u00f3pez Del Amo et al., 2022<\/a>Genetic reagent (D. melanogaster)tubP(FRT.stop)Gal4 UAS-Flp UAS-mCD8::GFP<a href=\"#bib26\">Koreman et al., 2021<\/a>Genetic reagent (D. melanogaster)\u03b1-Catenin-GFPBloomington Drosophila Stock CenterRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_58787\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_58787<\/a>w[*]; P{w[+mC]=UAS-alpha-Cat.T:GFP.sg}3\/CyOGenetic reagent (D. melanogaster)gcm-Cas9<a href=\"#bib10\">Chen et al., 2024<\/a>Genetic reagent (D. melanogaster)repo-Gal4Bloomington Drosophila Stock CenterRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_7415\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_7415<\/a>Genetic reagent (D. melanogaster)Act5C-Cas9Bloomington Drosophila Stock CenterRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_54590\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_54590<\/a>Act5C-Cas9.PGenetic reagent (D. melanogaster)vGlutSS1Bloomington Drosophila Stock CenterRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_91246\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_91246<\/a>Genetic reagent (D. melanogaster)brpd09839Bloomington Drosophila Stock CenterRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_85508\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_85508<\/a>Genetic reagent (D. melanogaster)EcRM554fsBloomington Drosophila Stock CenterRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_4894\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_4894<\/a>Genetic reagent (D. simulans)Lhr1 (D. simulans)<a href=\"#bib5\">Brideau et al., 2006<\/a>Genetic reagent (D. melanogaster)Df(4)ED6380Bloomington Drosophila Stock CenterRRID:<a href=\"https:\/\/identifiers.org\/RRID:BDSC_602664\" rel=\"nofollow noopener\" target=\"_blank\">BDSC_602664<\/a>Recombinant DNA reagentpAC-U63-QtgRNA2.1-ubiGal80(DE)-His2AV (plasmid)This studyin Materials and methodsRecombinant DNA reagentpAC-U63-QtgRNA2.1-tubGal80(DE)-His2AV (plasmid)This studyin Materials and methodsRecombinant DNA reagentpAC-U63-QtgRNA2.1-tubGal80(DE)-SV40 (plasmid)This studyin Materials and methodsRecombinant DNA reagentpAC-U63-QtgRNA2.1-tubBFP(HA) (plasmid)This studyin Materials and methodsRecombinant DNA reagentpAC-U63-QtgRNA2.1-tub-miRFP680-T2A-HO1(HA) (plasmid)This studyin Materials and methodsRecombinant DNA reagentpAC-U63-QtgRNA2.1\u20138 R (plasmid)<a href=\"#bib26\">Koreman et al., 2021<\/a>RRID:<a href=\"https:\/\/identifiers.org\/RRID:Addgene\" rel=\"nofollow noopener\" target=\"_blank\">Addgene<\/a> 170514Recombinant DNA reagentpENTR221-tubP (plasmid)<a href=\"#bib11\">Chen et al., 2025<\/a>Recombinant DNA reagentpAPIC-PHCS (plasmid)<a href=\"#bib21\">Han et al., 2011<\/a>Recombinant DNA reagentpAC-U63-QtgRNA2.1-BR (plasmid)<a href=\"#bib26\">Koreman et al., 2021<\/a>RRID:<a href=\"https:\/\/identifiers.org\/RRID:Addgene\" rel=\"nofollow noopener\" target=\"_blank\">Addgene<\/a> 170513SoftwareFiji<a href=\"https:\/\/fiji.sc\/\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/fiji.sc\/<\/a>RRID:<a href=\"https:\/\/identifiers.org\/RRID:SCR_002285\" rel=\"nofollow noopener\" target=\"_blank\">SCR_002285<\/a>SoftwareR<a href=\"https:\/\/www.r-project.org\/\" rel=\"nofollow noopener\" target=\"_blank\">https:\/\/www.r-project.org\/<\/a>RRID:<a href=\"https:\/\/identifiers.org\/RRID:SCR_001905\" rel=\"nofollow noopener\" target=\"_blank\">SCR_001905<\/a>SoftwareAdobe PhotoshopAdobeRRID:<a href=\"https:\/\/identifiers.org\/RRID:SCR_014199\" rel=\"nofollow noopener\" target=\"_blank\">SCR_014199<\/a>SoftwareAdobe IllustratorAdobeRRID:<a href=\"https:\/\/identifiers.org\/RRID:SCR_010279\" rel=\"nofollow noopener\" target=\"_blank\">SCR_010279<\/a>Chemical compoundDAPI (4&#8242;,6-Diamidino-2-Phenylindole)Life TechnologyRRID:<a href=\"https:\/\/identifiers.org\/RRID:62248\" rel=\"nofollow noopener\" target=\"_blank\">62248<\/a>1:1000 dilutionAntibodyanti-Elav 7E8A10 (Rat monoclonal)Developmental Studies Hybridoma BankRRID:<a href=\"https:\/\/identifiers.org\/RRID:AB_528218\" rel=\"nofollow noopener\" target=\"_blank\">AB_528218<\/a>1:50 dilutionAntibodyanti-Repo 8D12 (Mouse monoclonal)Developmental Studies Hybridoma BankRRID:<a 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with Cy5 (donkey polyclonal)Jackson ImmunoResearchRRID:<a href=\"https:\/\/identifiers.org\/RRID:AB_2340607\" rel=\"nofollow noopener\" target=\"_blank\">AB_2340607<\/a>1:400 dilutionAntibodyanti-rat secondary antibody conjugated with Cy5 (donkey polyclonal)Jackson ImmunoResearchRRID:<a href=\"https:\/\/identifiers.org\/RRID:AB_2340672\" rel=\"nofollow noopener\" target=\"_blank\">AB_2340672<\/a>1:400 dilutionCommercial assay or kitT4 ligaseNew England Biolabs Inc.#M0202Commercial assay or kitNEBuilder HiFi DNA Assembly Master MixNew England Biolabs Inc.#E2621<\/p>\n","protected":false},"excerpt":{"rendered":"Genetic reagent (D. melanogaster)gRNA-40D2-tgFE-uHAllen et al., 2021w; gRNA-40D2-tgFE-uHVK00037Genetic reagent (D. melanogaster)gRNA-40D2-Qtg2.1-uDEHThis studyRRID:BDSC_606005w; gRNA-40D2-Qtg2.1-uDEHVK00037; in Materials and methodsGenetic reagent&hellip;\n","protected":false},"author":2,"featured_media":158034,"comment_status":"","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[7],"tags":[111,139,69,147],"class_list":{"0":"post-324299","1":"post","2":"type-post","3":"status-publish","4":"format-standard","5":"has-post-thumbnail","7":"category-science","8":"tag-new-zealand","9":"tag-newzealand","10":"tag-nz","11":"tag-science"},"_links":{"self":[{"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/posts\/324299","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/comments?post=324299"}],"version-history":[{"count":0,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/posts\/324299\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/media\/158034"}],"wp:attachment":[{"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/media?parent=324299"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/categories?post=324299"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/tags?post=324299"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}