{"id":511259,"date":"2026-07-05T19:03:29","date_gmt":"2026-07-05T19:03:29","guid":{"rendered":"https:\/\/www.newsbeep.com\/nz\/511259\/"},"modified":"2026-07-05T19:03:29","modified_gmt":"2026-07-05T19:03:29","slug":"non-coding-dna-dynamics-and-its-roles-as-a-physical-barrier-in-genome-safeguarding-across-early-development-and-evolution","status":"publish","type":"post","link":"https:\/\/www.newsbeep.com\/nz\/511259\/","title":{"rendered":"Non-coding DNA dynamics and its roles as a physical barrier in genome safeguarding across early development and evolution"},"content":{"rendered":"

Aburomia R, Khaner O, Sidow A (2003) Functional evolution in the ancestral lineage of vertebrates or when genomic complexity was wagging its morphological tail. J Struct Funct Genom 3(1-4):45\u201352.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Aguirre-Lavin T, Adenot P, Bonnet-Garnier A, Lehmann G, Fleurot R, Boulesteix C et al. (2012) 3D-FISH analysis of embryonic nuclei in mouse highlights several abrupt changes of nuclear organization during preimplantation development. BMC Dev Biol 12: 30.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ahmed K, Dehghani H, Rugg-Gunn P, Fussner E, Rossant J, Bazett-Jones DP (2010) Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo. PLoS ONE 5(5):e10531.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Akk\u00f6se \u00dc, Adebali O (2023) The interplay of 3D genome organization with UV-induced DNA damage and repair. J Biol Chem 299(5):104679.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

\u00c1lvarez-Gonz\u00e1lez L, Arias-Sard\u00e1 C, Montes-Espu\u00f1a L, Mar\u00edn-Gual L, Vara C, Lister NC et al. (2022a) Principles of 3D chromosome folding and evolutionary genome reshuffling in mammals. Cell Rep 41(12):111839.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

\u00c1lvarez-Gonz\u00e1lez L, Burden F, Doddamani D, Malinverni R, Leach E, Mar\u00edn-Garc\u00eda C et al. (2022b) 3D chromatin remodelling in the germ line modulates genome evolutionary plasticity. Nat Commun 13(1):2608.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

\u00c1lvarez-Gonz\u00e1lez L, Ruiz-Herrera A (2025) Evolution of 3D chromatin folding. Annu Rev Anim Biosci 13(1):49\u201371.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ashley-Ross MA, Hsieh ST, Gibb AC, Blob RW (2013) Vertebrate land invasions-past, present, and future: an introduction to the symposium. Integr Comp Biol 53(2):192\u2013196.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Bass HW (2003) Telomere dynamics unique to meiotic prophase: formation and significance of the bouquet. Cell Mol Life Sci 60(11):2319\u20132324.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Batut B, Knibbe C, Marais G, Daubin V (2014) Reductive genome evolution at both ends of the bacterial population size spectrum. Nat Rev Microbiol 12(12):841\u2013850.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Bhadra S, Leitch IJ, Onstein RE (2023) From genome size to trait evolution during angiosperm radiation. Trends Genet 39(10):728\u2013735.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Biederman MK, Nelson MM, Asalone KC, Pedersen AL, Saldanha CJ, Bracht JR (2018) Discovery of the first germline-restricted gene by subtractive transcriptomic analysis in the zebra finch, Taeniopygia guttata. Curr Biol 28(10):1620\u20131627.e5.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Blackburn DG (2015) Evolution of vertebrate viviparity and specializations for fetal nutrition: a quantitative and qualitative analysis. J Morphol 276(8):961\u2013990.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Blackburn DG, Hughes DF (2024) Phylogenetic analysis of viviparity, matrotrophy, and other reproductive patterns in chondrichthyan fishes. Biol Rev Camb Philos Soc 99(4):1314\u20131356.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Blokhina YP, Nguyen AD, Draper BW, Burgess SM (2019) The telomere bouquet is a hub where meiotic double-strand breaks, synapsis, and stable homolog juxtaposition are coordinated in the zebrafish, Danio rerio. PLoS Genet 15(1):e1007730.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Borsos M, Perricone SM, Schauer T, Pontabry J, de Luca KL, de Vries SS et al. (2019) Genome-lamina interactions are established de novo in the early mouse embryo. Nature 569(7758):729\u2013733.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Borsos M, Torres-Padilla ME (2016) Building up the nucleus: nuclear organization in the establishment of totipotency and pluripotency during mammalian development. Genes Dev 30(6):611\u2013621.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Bredeson JV, Mudd AB, Medina-Ruiz S, Mitros T, Smith OK, Miller KE et al. (2024) Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs. Nat Commun 15(1):579.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Bridger JM, Pereira RT, Pina C, Tosi S, Lewis A (2022) Alterations to genome organisation in stem cells, their differentiation and associated diseases. Results Probl cell Differ 70:71\u2013102.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Burgess RC, Burman B, Kruhlak MJ, Misteli T (2014) Activation of DNA damage response signaling by condensed chromatin. Cell Rep 9(5):1703\u20131717.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Charney ND, Castorino JJ, Dobro MJ, Steely SL (2014) Embryo development inside female salamander (Ambystoma jeffersonianum-laterale) prior to egg laying. PLoS ONE 9(3):e91919.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Chen X, Ke Y, Wu K, Zhao H, Sun Y, Gao L et al. (2019) Key role for CTCF in establishing chromatin structure in human embryos. Nature 576(7786):306\u2013310.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Chiolo I, Minoda A, Colmenares SU, Polyzos A, Costes SV, Karpen GH (2011) Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair. Cell 144(5):732\u2013744.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Cowan CR, Carlton PM, Cande WZ (2001) The polar arrangement of telomeres in interphase and meiosis. Rabl organization and the bouquet. Plant Physiol 125(2):532\u2013538.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Cremer T, Cremer M, Cremer C (2018) The 4D nucleome: genome compartmentalization in an evolutionary context. Biochemistry 83(4):313\u2013325.<\/p>\n

CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Cullen KE (2009) Encyclopedia of life science. Facts On File 132 West 31st Street, New York NY 10001.<\/p>\n

David KT (2022) Global gradients in the distribution of animal polyploids. Proc Natl Acad Sci USA 119(48):e2214070119.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

de Boer CG, Taipale J (2024) Hold out the genome: a roadmap to solving the cis-regulatory code. Nature 625(7993):41\u201350.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Dedukh D, Krasikova A (2022) Delete and survive: strategies of programmed genetic material elimination in eukaryotes. Biol Rev Camb Philos Soc 97(1):195\u2013216.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Deng L, Luo M, Velikovsky A, Mariuzza RA (2013) Structural insights into the evolution of the adaptive immune system. Annu Rev Biophys 42:191\u2013215.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Dittrich C, Hoelzl F, Smith S, Fouilloux CA, Parker DJ, O\u2019Connell LA et al. (2024) Genome assembly of the dyeing poison frog provides insights into the dynamics of transposable element and genome-size evolution. Genome Biol Evol 16(6):evae109.<\/p>\n

Domb K, Wang N, Hummel G, Liu C (2022) Spatial features and functional implications of plant 3D genome organization. Annu Rev Plant Biol 73:173\u2013200.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Drotos KHI, Zagoskin MV, Kess T, Gregory TR, Wyngaard GA (2022) Throwing away DNA: programmed downsizing in somatic nuclei. Trends Genet 38(5):483\u2013500.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Dudley JS, Murphy CR, Thompson MB, McAllan BM (2021) Uterine cellular changes during mammalian pregnancy and the evolution of placentation. Biol Reprod 105(6):1381\u20131400.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ebadi M, Bafort Q, Mizrachi E, Audenaert P, Simoens P, Van Montagu M et al. (2023) The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil. Proc Natl Acad Sci USA 120(41):e2307289120.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Elliott TA, Gregory TR (2015) What\u2019s in a genome? The C-value enigma and the evolution of eukaryotic genome content. Philos Trans R Soc Lond Ser B Biol Sci 370(1678):20140331.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

ENCODE Project Consortium (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489(7414):57\u201374.<\/p>\n

Article<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Epel D (2003) Protection of DNA during early development: adaptations and evolutionary consequences. Evol Dev 5(1):83\u201388.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Estrem B, Wang J (2023) Programmed DNA elimination in the parasitic nematode Ascaris. PLoS Pathog 19(2):e1011087.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Falcon F, Tanaka EM, Rodriguez-Terrones D (2023) Transposon waves at the water-to-land transition. Curr Opin Genet Dev 81:102059.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Fawcett JA, Maere S, Van de Peer Y (2009) Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci USA 106(14):5737\u20135742.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Flajnik MF (2018) A cold-blooded view of adaptive immunity. Nat Rev Immunol 18(7):438\u2013453.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Flyamer IM, Gassler J, Imakaev M, Brand\u00e3o HB, Ulianov SV, Abdennur N et al. (2017) Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition. Nature 544(7648):110\u2013114.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Garcia-Nieto PE, Schwartz EK, King DA, Paulsen J, Collas P, Herrera RE et al. (2017) Carcinogen susceptibility is regulated by genome architecture and predicts cancer mutagenesis. EMBO J 36(19):2829\u20132843.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Gregory TR (2001) Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma. Biol Rev Camb Philos Soc 76(1):65\u2013101.<\/p>\n

CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Gregory TR (2005) The C-value enigma in plants and animals: a review of parallels and an appeal for partnership. Ann Bot 95(1):133\u2013146.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Guerreiro I, Rang FJ, Kawamura YK, Kroon-Veenboer C, Korving J, Groenveld FC et al. (2024) Antagonism between H3K27me3 and genome-lamina association drives atypical spatial genome organization in the totipotent embryo. Nat Genet 56(10):2228\u20132237.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

He J, Yan A, Chen B, Huang J, Kee K (2023) 3D genome remodeling and homologous pairing during meiotic prophase of mouse oogenesis and spermatogenesis. Dev Cell 58(24):3009\u20133027.e6.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Hegarty MJ, Hiscock SJ (2008) Genomic clues to the evolutionary success of polyploid plants. Curr Biol 18(10):R435\u2013R444.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Hidalgo O, Pellicer J, Christenhusz M, Schneider H, Leitch AR, Leitch IJ (2017) Is there an upper limit to genome size? Trends Plant Sci 22(7):567\u2013573.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Hime PM, Lemmon AR, Lemmon ECM, Prendini E, Brown JM, Thomson RC et al. (2021) Phylogenomics reveals ancient gene tree discordance in the amphibian tree of life. Syst Biol 70(1):49\u201366.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Hodson CN, Ross L (2021) Evolutionary perspectives on germline-restricted chromosomes in flies (Diptera). Genome Biol Evol 13(6):evab072.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Hoencamp C, Dudchenko O, Elbatsh AMO, Brahmachari S, Raaijmakers JA, van Schaik T et al. (2021) 3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Science 372(6545):984\u2013989.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Holland LZ, Albalat R, Azumi K, Benito-Guti\u00e9rrez E, Blow MJ, Bronner-Fraser M et al. (2008) The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res 18(7):1100\u20131111.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Houben A, Fuchs J, Banaei-Moghaddam AM, Chen J, Kim G, Liu T (2025) Does chromoanagenesis play a role in the origin of B chromosomes? Heredity<\/p>\n

Hug CB, Grimaldi AG, Kruse K, Vaquerizas JM (2017) Chromatin architecture emerges during zygotic genome activation independent of transcription. Cell 169(2):216\u2013228.e9.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ivankovi\u0107 M, Brand JN, Pandolfini L, Brown T, Pippel M, Rozanski A et al. (2024) A comparative analysis of planarian genomes reveals regulatory conservation in the face of rapid structural divergence. Nat Commun 15(1):8215.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Janssen A, Colmenares SU, Karpen GH (2018) Heterochromatin: guardian of the Genome. Annu Rev Cell Dev Biol 34:265\u2013288.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Jin Q, Trelles-Sticken E, Scherthan H, Loidl J (1998) Yeast nuclei display prominent centromere clustering that is reduced in nondividing cells and in meiotic prophase. J Cell Biol 141(1):21\u201329.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Kasahara M, Flajnik MF (2019) Origin and evolution of the specialized forms of proteasomes involved in antigen presentation. Immunogenetics 71(3):251\u2013261.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Katona G, Szab\u00f3 F, V\u00e9gv\u00e1ri Z, Sz\u00e9kely Jr.T, Liker A, Freckleton RP et al. (2023) Evolution of reproductive modes in sharks and rays. J Evol Biol 36(11):1630\u20131640.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Khaner O (2007) Evolutionary innovations of the vertebrates. Integr Zool 2(2):60\u201367.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

King HM, Shubin NH, Coates MI, Hale ME (2011) Behavioral evidence for the evolution of walking and bounding before terrestriality in sarcopterygian fishes. Proc Natl Acad Sci USA 108(52):21146\u201321151.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Kinsella CM, Ruiz-Ruano FJ, Dion-C\u00f4t\u00e9 AM, Charles AJ, Gossmann TI, Cabrero J et al. (2019) Programmed DNA elimination of germline development genes in songbirds. Nat Commun 10(1):5468.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Klemm SL, Shipony Z, Greenleaf WJ (2019) Chromatin accessibility and the regulatory epigenome. Nat Rev Genet 20(4):207\u2013220.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Kloc M, Kubiak JZ, Ghobrial RM (2022) Natural genetic engineering: a programmed chromosome\/DNA elimination. Dev Biol 486:15\u201325.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Knight CA, Molinari NA, Petrov DA (2005) The large genome constraint hypothesis: evolution, ecology and phenotype. Ann Bot 95(1):177\u2013190.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Kraaijeveld K (2010) Genome size and species diversification. Evol Biol 37(4):227\u2013233.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Kuraku S (2021) Shark and ray genomics for disentangling their morphological diversity and vertebrate evolution. Dev Biol 477:262\u2013272.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ladisa C, Ma Y, Habibi HR (2021) Seasonally related metabolic changes and energy allocation associated with growth and reproductive phases in the liver of male goldfish (Carassius auratus). J Proteom 241:104237.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Lamm N, Rogers S, Cesare AJ (2021) Chromatin mobility and relocation in DNA repair. Trends Cell Biol 31(10):843\u2013855.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Lee H, Seo P, Teklay S, Yuguchi E, Benetta ED, Werren JH et al. (2023) Ability of a selfish B chromosome to evade genome elimination in the jewel wasp, Nasonia vitripennis. Heredity 131(3):230\u2013237.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Levit GS, Ho\u00dffeld U, Naumann B, Lukas P, Olsson L (2022) The biogenetic law and the Gastraea theory: from Ernst Haeckel\u2019s discoveries to contemporary views. J Exp Zool Part B Mol Dev Evol 338(1-2):13\u201327.<\/p>\n

Article<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Li D, He M, Tang Q, Tian S, Zhang J, Li Y et al. (2022) Comparative 3D genome architecture in vertebrates. BMC Biol 20(1):99.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Liao IJ, Lu TM, Chen ME, Luo YJ (2023) Spiralian genomics and the evolution of animal genome architecture. Brief Funct Genom 22(6):498\u2013508.<\/p>\n

Article<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Liedtke HC, Wiens JJ, Gomez-Mestre I (2022) The evolution of reproductive modes and life cycles in amphibians. Nat Commun 13(1):7039.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Liu C, Ren Y, Li Z, Hu Q, Yin L, Wang H et al. (2021) Giant African snail genomes provide insights into molluscan whole-genome duplication and aquatic-terrestrial transition. Mol Ecol Resour 21(2):478\u2013494.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Liu G, Mattick JS, Taft RJ (2013) A meta-analysis of the genomic and transcriptomic composition of complex life. Cell Cycle 12(13):2061\u20132072.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

L\u00f3pez JA, Ryburn JA, Fedrigo O, Naylor GJ (2006) Phylogeny of sharks of the family Triakidae (Carcharhiniformes) and its implications for the evolution of carcharhiniform placental viviparity. Mol Phylogenetics Evol 40(1):50\u201360.<\/p>\n

Article<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Lu J, Li W, Tang F (2025) Single-cell long-read Hi-C, scNanoHi-C2, details 3D genome reorganization in embryonic-stage germ cells. Nat Struct Mol Biol 32(10):2112\u20132127.<\/p>\n

Lukyanchikova V, Nuriddinov M, Belokopytova P, Taskina A, Liang J, Reijnders M et al. (2022) Anopheles mosquitoes reveal new principles of 3D genome organization in insects. Nat Commun 13(1):1960.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Lysak MA (2022) Celebrating Mendel, McClintock, and Darlington: on end-to-end chromosome fusions and nested chromosome fusions. Plant Cell 34(7):2475\u20132491.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Mable BK, Alexandrou MA, Taylor MI (2011) Genome duplication in amphibians and fish: an extended synthesis. J Zool 284(3):151\u2013182.<\/p>\n

Article<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Maestra B, Hans de Jong J, Shepherd K, Naranjo T (2002) Chromosome arrangement and behaviour of two rye homologous telosomes at the onset of meiosis in disomic wheat-5RL addition lines with and without the Ph1 locus. Chromosome Res 10(8):655\u2013667.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Magor KE, Miranzo Navarro D, Barber MR, Petkau K, Fleming-Canepa X, Blyth GA et al. (2013) Defense genes missing from the flight division. Dev Comp Immunol 41(3):377\u2013388.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Mar\u00edn-Gual L, Gonz\u00e1lez-Rodelas L, Pujol G, Vara C, Mart\u00edn-Ruiz M, Berr\u00edos S et al. (2022) Strategies for meiotic sex chromosome dynamics and telomeric elongation in Marsupials. PLoS Genet 18(2):e1010040.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Mar\u00edn-Gual L, Vara C, Sainz-Urruela R, Cuartero Y, \u00c1lvarez-Gonz\u00e1lez L, Felipe-Medina N et al. (2025) Meiotic cohesin RAD21L shapes 3D genome structure and transcription in the male germline. Sci Adv 11(40):eadv2283.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Marin-Gual L, Waters PD, Ruiz-Herrera A (2026) Male meiosis at the helm: shaping genomes and sex chromosomes in emerging vertebrate models. Biol Reprod 114(2):360\u2013374<\/p>\n

Marl\u00e9taz F, Timoshevskaya N, Timoshevskiy VA, Parey E, Simakov O, Gavriouchkina D et al. (2024) The hagfish genome and the evolution of vertebrates. Nature 627(8005):811\u2013820.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Marshall CR (2006) Explaining the cambrian \u201cExplosion\u201d of animals. Annu Rev Earth Planet Sci 34(1):355\u2013384.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Marshall WF, Dernburg AF, Harmon B, Agard DA, Sedat JW (1996) Specific interactions of chromatin with the nuclear envelope: positional determination within the nucleus in Drosophila melanogaster. Mol Biol Cell 7(5):825\u2013842.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

McCauley DW, Docker MF, Whyard S, Li W (2015) Lampreys as diverse model organisms in the genomics era. Bioscience 65(11):1046\u20131056.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Medeiros APM, Santos BA, Betancur RR (2022) Does genome size increase with water depth in marine fishes? Evolution 76(7):1578\u20131589.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Meyer A, Schloissnig S, Franchini P, Du K, Woltering JM, Irisarri I et al. (2021) Giant lungfish genome elucidates the conquest of land by vertebrates. Nature 590(7845):284\u2013289.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Mizuguchi T, Barrowman J, Grewal SI (2015) Chromosome domain architecture and dynamic organization of the fission yeast genome. FEBS Lett 589(20 Pt A):2975\u20132986.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Moretti C, St\u00e9vant I, Ghavi-Helm Y (2020) 3D genome organisation in Drosophila. Brief Funct Genom 19(2):92\u2013100.<\/p>\n

Article<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

M\u00fcller V, de Boer RJ, Bonhoeffer S, Szathm\u00e1ry E (2018) An evolutionary perspective on the systems of adaptive immunity. Biol Rev Camb Philos Soc 93(1):505\u2013528.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Mytlis A, Kumar V, Qiu T, Deis R, Hart N, Levy K et al. (2022) Control of meiotic chromosomal bouquet and germ cell morphogenesis by the zygotene cilium. Sci (N Y, NY) 376(6599):eabh3104.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Mytlis A, Levy K, Elkouby YM (2023) The many faces of the bouquet centrosome MTOC in meiosis and germ cell development. Curr Opin Cell Biol 81:102158.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Newman TAC, Beltran B, McGehee JM, Elnatan D, Cahoon CK, Paddy MR et al. (2022) Diffusion and distal linkages govern interchromosomal dynamics during meiotic prophase. Proc Natl Acad Sci USA 119(12):e2115883119.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Niu L, Shen W, Shi Z, Tan Y, He N, Wan J et al. (2021) Three-dimensional folding dynamics of the Xenopus tropicalis genome. Nat Genet 53(7):1075\u20131087.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A et al. (2022) The complete sequence of a human genome. Science 376(6588):44\u201353.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ogata H, Nomura T, Hata M (1979) Prostaglandin F2a changes induced by ovulatory stimuli the pond loach, Misgurnus anguillicaudatus. Nippon Suisan Gakkaishi 45(7):929\u2013931.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Olbrich T, Ruiz S (2022) Genome architecture and totipotency: an intertwined relation during early embryonic development. BioEssays 44(7):e2200029.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ostrovsky AN, Lidgard S, Gordon DP, Schwaha T, Genikhovich G, Ereskovsky AV (2016) Matrotrophy and placentation in invertebrates: a new paradigm. Biol Rev Camb Philos Soc 91(3):673\u2013711.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ovchinnikov V, Uliano-Silva M, Wilkinson M, Wood J, Smith M, Oliver K et al. (2023) Caecilian genomes reveal the molecular basis of adaptation and convergent evolution of limblessness in snakes and caecilians. Mol Biol Evol 40(5):msad102<\/p>\n

Padykula HA, Taylor JM (1976) Ultrastructural evidence for loss of the trophoblastic layer in the chorioallantoic placenta of Australian bandicoots (Marsupialia: Peramelidae). Anat Rec 186(3):357\u2013385.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Pal M, Altamirano-Pacheco L, Schauer T, Torres-Padilla ME (2023) Reorganization of lamina-associated domains in early mouse embryos is regulated by RNA polymerase II activity. Genes Dev 37(19-20):901\u2013912.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Parey E, Louis A, Montfort J, Guiguen Y, Roest Crollius H, Berthelot C (2022) An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication. Genome Res 32(9):1685\u20131697.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Patel L, Kang R, Rosenberg SC, Qiu Y, Raviram R, Chee S et al. (2019) Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase. Nat Struct Mol Biol 26(3):164\u2013174.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Payne AC, Chiang ZD, Reginato PL, Mangiameli SM, Murray EM, Yao CC et al. (2021) In situ genome sequencing resolves DNA sequence and structure in intact biological samples. Science 371(6532):eaay3446<\/p>\n

Pecori F, Torres-Padilla ME (2023) Dynamics of nuclear architecture during early embryonic development and lessons from liveimaging. Dev Cell 58(6):435\u2013449.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Kim H et al. (2006) Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res 16(10):1262\u20131269.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Pritam S, Signor S (2025) Evolution of piRNA-guided defense against transposable elements. Trends Genet 41(5):390\u2013401.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Py\u0161ek P, Lu\u010danov\u00e1 M, Dawson W, Essl F, Kreft H, Leitch IJ et al. (2023) Small genome size and variation in ploidy levels support the naturalization of vascular plants but constrain their invasive spread. New Phytol 239(6):2389\u20132403.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Qiu GH (2015) Protection of the genome and central protein-coding sequences by non-coding DNA against DNA damage from radiation. Mutat Res Rev Mutat Res 764:108\u2013117.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Qiu GH (2016) Genome defense against exogenous nucleic acids in eukaryotes by non-coding DNA occurs through CRISPR-like mechanisms in the cytosol and the bodyguard protection in the nucleus. Mutat Res Rev Mutat Res 767:31\u201341.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Qiu GH, Fu M, Zheng X, Huang C (2025) Protection of the genome and the central exome by peripheral non-coding DNA against DNA damage in health, ageing and age-related diseases. Biol Rev Camb Philos Soc 100(2):508\u2013529.<\/p>\n

Qiu GH, Huang C, Zheng X, Yang X (2018) The protective function of noncoding DNA in genome defense of eukaryotic male germ cells. Epigenomics 10(4):499\u2013517.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Qiu GH, Zheng X, Fu M, Huang C, Yang X (2021) The decreased exclusion of nuclear eccDNA: from molecular and subcellular levels to human aging and age-related diseases. Ageing Res Rev 67:101306.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Rang FJ, Kind J, Guerreiro I (2023) The role of heterochromatin in 3D genome organization during preimplantation development. Cell Rep 42(4):112248.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Redmond AK, Casey D, Gundappa MK, Macqueen DJ, McLysaght A (2023) Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor. Nat Commun 14(1):2879.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Robertson FM, Gundappa MK, Grammes F, Hvidsten TR, Redmond AK, Lien S et al. (2017) Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification. Genome Biol 18(1):111.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Ruffo P, Traynor BJ, Conforti FL (2025) Unveiling the regulatory potential of the non-coding genome: insights from the human genome project to precision medicine. Genes Dis 12(6):101652.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Saha A, Bellucci A, Fratini S, Cannicci S, Ciofi C, Iannucci A (2023) Ecological factors and parity mode correlate with genome size variation in squamate reptiles. BMC Ecol Evol 23(1):69.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Schartl M, Woltering JM, Irisarri I, Du K, Kneitz S, Pippel M et al. (2024) The genomes of all lungfish inform on genome expansion and tetrapod evolution. Nature 634(8032):96\u2013103<\/p>\n

Scherthan H (2001) A bouquet makes ends meet. Nat Rev Mol Cell Biol 2(8):621\u2013627.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Scherthan H (2007) Telomere attachment and clustering during meiosis. Cell Mol Life Sci 64(2):117\u2013124.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Schlecht HB, Lichten M, Goldman AS (2004) Compartmentalization of the yeast meiotic nucleus revealed by analysis of ectopic recombination. Genetics 168(3):1189\u20131203.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Schloissnig S, Kawaguchi A, Nowoshilow S, Falcon F, Otsuki L, Tardivo P et al. (2021) The giant axolotl genome uncovers the evolution, scaling, and transcriptional control of complex gene loci. Proc Natl Acad Sci USA 118(15):e2017176118<\/p>\n

Schnabl J, Wang J, Hohmann U, Gehre M, Batki J, Andreev VI et al. (2021) Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex. Genes Dev 35(5-6):392\u2013409.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Selmecki AM, Maruvka YE, Richmond PA, Guillet M, Shoresh N, Sorenson AL et al. (2015) Polyploidy can drive rapid adaptation in yeast. Nature 519(7543):349\u2013352.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Smith JJ, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ et al. (2018) The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution. Nat Genet 50(2):270\u2013277.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Smith JJ, Timoshevskiy VA, Saraceno C (2021) Programmed DNA Elimination in Vertebrates. Annu Rev Anim Biosci 9:173\u2013201.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Soto, Gomez, Brown M, Pironon MJM, Bure\u0161 S, Verde P, Arregoitia LD, Vesel\u00fd P et al. (2024) Genome size is positively correlated with extinction risk in herbaceous angiosperms. New Phytol 243(6):2470\u20132485.<\/p>\n

Article<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Stefanov BA, Nowacki M (2025) Functions and mechanisms of eukaryotic RNA-guided programmed DNA elimination. Biochem Soc Trans 53(2):473\u2013485.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Stepankiw N, Yang AWH, Hughes TR (2023) The human genome contains over a million autonomous exons. Genome Res 33(11):1865\u20131878.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Stevens TJ, Lando D, Basu S, Atkinson LP, Cao Y, Lee SF et al. (2017) 3D structures of individual mammalian genomes studied by single-cell Hi-C. Nature 544(7648):59\u201364.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

St\u00f6ck M, Ustinova J, Betto-Colliard C, Schartl M, Moritz C, Perrin N (2012) Simultaneous Mendelian and clonal genome transmission in a sexually reproducing, all-triploid vertebrate. Proc Biol Sci 279(1732):1293\u20131299.<\/p>\n

PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Sutoh Y, Kasahara M (2021) The immune system of jawless vertebrates: insights into the prototype of the adaptive immune system. Immunogenetics 73(1):5\u201316.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Taft RJ, Pheasant M, Mattick JS (2007) The relationship between non-protein-coding DNA and eukaryotic complexity. BioEssays 29(3):288\u2013299.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Thompson AW, Black AC, Huang Y, Shi Q, Furness AI, Braasch I et al. (2024) Transcriptomic data support phylogenetic congruence and reveal genomic changes associated with the repeated evolution of annualism in aplocheiloid killifishes (Cyprinodontiformes). Mol Phylogenetics Evol 201:108209.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Tong K, Datta S, Cheng V, Haas DJ, Gourisetti S, Yopp HL et al. (2025) Genome duplication in a long-term multicellularity evolution experiment. Nature 639(8055):691\u2013699.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Towbin BD, Gonz\u00e1lez-Aguilera C, Sack R, Gaidatzis D, Kalck V, Meister P et al. (2012) Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery. Cell 150(5):934\u2013947.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Uesaka M, Kuratani S, Irie N (2022) The developmental hourglass model and recapitulation: an attempt to integrate the two models. J Exp Zool Part B Mol Dev Evol 338(1-2):76\u201386.<\/p>\n

Article<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Van de Peer Y, Ashman TL, Soltis PS, Soltis DE (2021) Polyploidy: an evolutionary and ecological force in stressful times. Plant cell 33(1):11\u201326.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Van de Peer Y, Maere S, Meyer A (2009) The evolutionary significance of ancient genome duplications. Nat Rev Genet 10(10):725\u2013732.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Van de Peer Y, Mizrachi E, Marchal K (2017) The evolutionary significance of polyploidy. Nat Rev Genet 18(7):411\u2013424.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Vara C, Paytuv\u00ed-Gallart A, Cuartero Y, Le Dily F, Garcia F, Salv\u00e0-Castro J et al. (2019) Three-dimensional genomic structure and cohesin occupancy correlate with transcriptional activity during spermatogenesis. Cell Rep 28(2):352\u2013367.e359.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Vara C, Ruiz-Herrera A (2022) Unpacking chromatin remodelling in germ cells: implications for development and evolution. Trends Genet 38(5):422\u2013425.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Vargas-Ch\u00e1vez C, Ben\u00edtez-\u00c1lvarez L, Mart\u00ednez-Redondo GI, \u00c1lvarez-Gonz\u00e1lez L, Salces-Ortiz J, Eleftheriadi K et al. (2025) An episodic burst of massive genomic rearrangements and the origin of non-marine annelids. Nat Ecol Evol 9(7):1263\u20131279.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Vinogradov AE (2000) Larger genomes for molluskan land pioneers. Genome 43(1):211\u2013212.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Vinogradov AE (2003) Selfish DNA is maladaptive: evidence from the plant Red List. Trends Genet 19(11):609\u2013614.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Vinogradov AE (2004) Genome size and extinction risk in vertebrates. Proc Biol Sci 271(1549):1701\u20131705.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Vl\u010dek, H\u00e4m\u00e4l\u00e4 J, Vives T, Cobo C, Curran E, \u0160r\u00e1mkov\u00e1 G, Slotte T et al. (2025) Whole-genome duplication increases genetic diversity and load in outcrossing Arabidopsis arenosa. Proc Natl Acad Sci USA 122(31):e2501739122.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Vontzou N, Pei Y, Mueller JC, Reifov\u00e1 R, Ruiz-Ruano FJ, Schlebusch SA et al. (2023) Songbird germline-restricted chromosome as a potential arena of genetic conflicts. Curr Opin Genet Dev 83:102113.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Wake DB, Koo MS (2018) Amphibians. Curr Biol 28(21):R1237\u2013R1241.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Wang K, Wang J, Zhu C, Yang L, Ren Y, Ruan J et al. (2021a) African lungfish genome sheds light on the vertebrate water-to-land transition. Cell 184(5):1362\u20131376.e18.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Wang X, Morton JA, Pellicer J, Leitch IJ, Leitch AR (2021b) Genome downsizing after polyploidy: mechanisms, rates and selection pressures. Plant J 107(4):1003\u20131015.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Warren WC, Grutzner F (2021) The evolution of viviparity in vertebrates. Adv Anat Embryol Cell Biol 234:7\u201319.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Whittington CM, Buddle AL, Griffith OW, Carter AM (2022) Embryonic specializations for vertebrate placentation. Philos Trans R Soc Lond Ser B, Biol Sci 377(1865):20210261.<\/p>\n


\n Google Scholar<\/a>\u00a0\n <\/p>\n

Xue LY, Friedman LR, Oleinick NL, Chiu SM (1994) Induction of DNA damage in gamma-irradiated nuclei stripped of nuclear protein classes: differential modulation of double-strand break and DNA-protein crosslink formation. Int J Radiat Biol 66(1):11\u201321.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J et al. (2024) Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nat Ecol Evol 8(3):519\u2013535.<\/p>\n

Article<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zenk F, Zhan Y, Kos P, L\u00f6ser E, Atinbayeva N, Sch\u00e4chtle M et al. (2021) HP1 drives de novo 3D genome reorganization in early Drosophila embryos. Nature 593(7858):289\u2013293.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zhang X, Wang T (2021) Plant 3D chromatin organization: important insights from chromosome conformation capture analyses of the last 10 years. Plant Cell Physiol 62(11):1648\u20131661.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n PubMed Central<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zhang Y, Xie W (2022) Building the genome architecture during the maternal to zygotic transition. Curr Opin Genet Dev 72:91\u2013100.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zhao K, Cheng S, Miao N, Xu P, Lu X, Zhang Y et al. (2019) A Pandas complex adapted for piRNA-guided transcriptional silencing and heterochromatin formation. Nat Cell Biol 21(10):1261\u20131272.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n

Zheng H, Xie W (2019) The role of 3D genome organization in development and cell differentiation. Nat Rev Mol Cell Biol 20(9):535\u2013550.<\/p>\n

Article<\/a>\u00a0
\n CAS<\/a>\u00a0
\n PubMed<\/a>\u00a0
\n
\n Google Scholar<\/a>\u00a0\n <\/p>\n","protected":false},"excerpt":{"rendered":"Aburomia R, Khaner O, Sidow A (2003) Functional evolution in the ancestral lineage of vertebrates or when genomic…\n","protected":false},"author":2,"featured_media":511260,"comment_status":"","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[7],"tags":[6471,67292,6423,4590,2294,133095,2486,53490,111,139,69,8754,147],"class_list":["post-511259","post","type-post","status-publish","format-standard","has-post-thumbnail","category-science","tag-biomedicine","tag-cytogenetics","tag-ecology","tag-evolutionary-biology","tag-general","tag-genome-evolution","tag-human-genetics","tag-molecular-evolution","tag-new-zealand","tag-newzealand","tag-nz","tag-plant-genetics-and-genomics","tag-science"],"_links":{"self":[{"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/posts\/511259","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/comments?post=511259"}],"version-history":[{"count":0,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/posts\/511259\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/media\/511260"}],"wp:attachment":[{"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/media?parent=511259"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/categories?post=511259"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.newsbeep.com\/nz\/wp-json\/wp\/v2\/tags?post=511259"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}