Integrated signatures define mutational processes in prostate cancer
PPCG cohort, WGS and variant calling We used data from the PPCG consortium of primary prostate cancer samples…
Large-scale analysis of bacterial genomes reveals thousands of lytic phages
Identification of lytic phages in bacterial assemblies To identify complete lytic bacteriophage genome sequences within bacterial genome assemblies…
Epigenetically driven and early immune evasion in colorectal cancer evolution
Sample collection and sequencing Our FF–WGS samples were comprised of processed data from previous sequencing experiments of our…
Sex and smoking bias in the selection of somatic mutations in human bladder
Sample collection Two epithelial brushes (2–3 cm2) from the bladder top (dome) and the bladder floor (trigone) were obtained…
The dawn of bryophyte genomics is here
Puttick, M. N. et al. Curr. Biol. 28, 733–745.e2 (2018). Article PubMed CAS Google Scholar Shaw, A. J,…
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap
Probe generation Probes, also referred to as ‘masks’ in the LexicHash paper, consist of a fixed number (m = 20,000…
Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair
PacBio Revio HiFiPCR-free Revio HiFi Sequencing (Dataset ID: PB-HiFi-1) Library Preparation Library preparation was performed using previously isolated…
Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize
Quantification of functional cis-variation To focus on genetic differences affecting TF binding in cis, we quantified TF footprints…
Structural variation in 1,019 diverse humans based on long-read sequencing
Samples and DNA extraction We initially selected 1,064 samples from the 1kGP collection, sourcing genomic DNA from Coriell…
Complex genetic variation in nearly complete human genomes
Liao, W.-W. et al. A draft human pangenome reference. Nature 617, 312–324 (2023). ADS PubMed PubMed Central CAS …